Préparation du jeu de données

On loade la matrice de reads par échantillon et par gènes obtenue par htseq-count. On supprime les dernières lignes qui correspondent aux reads non identifiés comme des gènes ou comme ambigus.

WT.K1 WT.K2 WT.K3 WT.N1 WT.N2 WT.N3
AT1G01010.1 291 224 90 211 199 286
AT1G01020.1 3 3 0 0 0 1
AT1G01020.2 1 1 1 2 1 5
AT1G01030.1 121 76 22 52 47 52
AT1G01040.1 6 11 2 8 12 14
AT1G01040.2 0 0 0 0 0 0

On rensigne le design et le type d’échantillons.

condition libType
WT.K1 untreated single-end
WT.K2 untreated single-end
WT.K3 untreated single-end
WT.N1 treated single-end
WT.N2 treated single-end
WT.N3 treated single-end

Normalisation

D’après les 2 papiers de review lus (et détails techniques sur https://hbctraining.github.io/DGE_workshop/lessons/02_DGE_count_normalization.html) :

  • RPKM non adaptés pour la DE : Permettent la comparaison entre gènes d’un même échantillon en corrigeant la profondeur de séquençage et la taille des gènes, mais ne permet pas de comparer des échantillons différents. (La somme des counts normalisés en RPKM ne sera pas la même pour deux échantillons). De plus, on compare des gènes identiques uniquement, donc la taille n’est pas importante.

  • DESeq : la médiane de ratios : On calcule un sizeFactor propre à chaque échantillon pour corriger la profondeur de séquençage. On divise chaque count par la moyenne géométrique des counts de son gène parmis tous les échantillons (Comme si on créait un nouvel échantillon de pseudo-référence. Les ratios dans un même échantillon devraient être similaires entre la plupart des gènes, qui sont en majorité non differentiellement exprimés). Le size factor d’un échantillon est la médiane de ces ratios pour tous les gènes. Pour normaliser, on divise tous les counts d’un échantillon par son sizeFactor. (On ne considère pas dans la médiane les gènes ayant une moyenne géométrique de 0)

  • TMM :

à voir avec EdgeR.

    WT.K1     WT.K2     WT.K3     WT.N1     WT.N2     WT.N3 
0.5807179 1.4086346 0.4817462 1.3604623 1.2840339 1.5661509 

Estimation de la variance

The variance seen between counts is the sum of two components: the sample-to-sample variation just mentioned, and the uncertaintyin measuring a concentration by counting reads. The latter, known as shot noise or Poisson noise, is the dominatingnoise source for lowly expressed genes. The former dominates for highly expressed genes. The sum of both, shot noiseand dispersion, is considered in the differential expression inference.Hence, the variancevof count values is modelled as \(v = s\mu + \alpha s^2\mu^2\),

where \(\mu\) is the expected normalized count value (estimated by the average normalized count value),\(s\) is the size factor for the sample under consideration, and \(\alpha\) is the dispersion value for the gene under consideration.

# Analyse d’expression différentielle

On continue maintenant avec DESeq2, qui utilise le même test statistique que DESeq mais avec des améliorations pour les estimations et le GLM. Test : maintenant que les variances ont été estimées, il devient facile de comparer les conditions avec un test, rbinom.

A decrire mieux et parler des modèles, tout ça tout ça.

On construit le dataset, puis on enlève les lignes dont la somme des reads ne dépasse pas 10.

[1] 1362

On a peu de gènes DE, seulement 48 avec un seuil à 5% de p-value, et 60 à 10%.

Visu du gènes le plus différentiellement exprimé :

On essaie de voir ce qui pourrait être étrange dans les données pour avoir si peu de gènes :

[1] 968

En prenant une condition sur le log2FoldChange on a beaucoup plus de gènes DE. Affichage en heatmap des gènes les plus différentiellement exprimés.

On s’intéresse maintenant à la liste de gènes sélectionnés et à leur ontologie.

Genes DE et leur GO
ensembl_transcript_id description external_gene_name
AT1G02030.1 AT1G02030.1 Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092] ZAT1
AT1G02310.1 AT1G02310.1 MAN1 [Source:UniProtKB/TrEMBL;Acc:A0A178WL81] MAN1
AT1G02880.1 AT1G02880.1 thiamin pyrophosphokinase1 [Source:TAIR;Acc:AT1G02880] TPK1
AT1G04180.1 AT1G04180.1 Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178WB22] YUC9
AT1G05675.1 AT1G05675.1 Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1W6AJW6] UGT74E1
AT1G06160.1 AT1G06160.1 Ethylene-responsive transcription factor ERF094 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND1] ERF094
AT1G07050.1 AT1G07050.1 CCT motif family protein [Source:TAIR;Acc:AT1G07050]
AT1G07160.1 AT1G07160.1 PP2C-type phosphatase AP2C2 [Source:UniProtKB/TrEMBL;Acc:F6LPR6]
AT1G08090.1 AT1G08090.1 High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811] NRT2.1
AT1G08100.1 AT1G08100.1 NRT2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F7] NRT2.2
AT1G08400.1 AT1G08400.1 RINT1-like protein MAG2L [Source:UniProtKB/Swiss-Prot;Acc:Q8GXP1] MAG2L
AT1G08650.1 AT1G08650.1 Phosphoenolpyruvate carboxylase kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK4] PPCK1
AT1G12200.1 AT1G12200.1 Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1K3]
AT1G12820.1 AT1G12820.1 Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7] AFB3
AT1G12940.1 AT1G12940.1 High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5] NRT2.5
AT1G13300.1 AT1G13300.1 Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67] HRS1
AT1G13420.1 AT1G13420.1 Cytosolic sulfotransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX56] SOT8
AT1G13430.1 AT1G13430.1 Cytosolic sulfotransferase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX55] STO9
AT1G14280.1 AT1G14280.1 Protein PHYTOCHROME KINASE SUBSTRATE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9T4] PKS2
AT1G14340.1 AT1G14340.1 RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4]
AT1G14890.1 AT1G14890.1 Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HXW0]
AT1G15550.1 AT1G15550.1 Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103] GA3OX1
AT1G16090.1 AT1G16090.1 Wall associated kinase-like 7 [Source:UniProtKB/TrEMBL;Acc:F4I2T5] WAKL7
AT1G16170.1 AT1G16170.1 Ephrin-A3 protein [Source:UniProtKB/TrEMBL;Acc:Q94K72]
AT1G16420.1 AT1G16420.1 Metacaspase-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA41] AMC8
AT1G16905.1 AT1G16905.1 Curculin-like (Mannose-binding) lectin family protein [Source:UniProtKB/TrEMBL;Acc:Q8GY81]
AT1G18710.1 AT1G18710.1 MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9M9U2] AtMYB47
AT1G18773.1 AT1G18773.1 FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1); Ha. [Source:TAIR;Acc:AT1G18773]
AT1G18810.1 AT1G18810.1 Protein PHYTOCHROME KINASE SUBSTRATE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS8] PKS3
AT1G19050.1 AT1G19050.1 At1g19050 [Source:UniProtKB/TrEMBL;Acc:Q2HIJ6] ARR7
AT1G19610.1 AT1G19610.1 Defensin-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:P82787] PDF1.4
AT1G19960.1 AT1G19960.1 Putative uncharacterized protein At1g19960 [Source:UniProtKB/TrEMBL;Acc:Q9LNS5]
AT1G20350.1 AT1G20350.1 Mitochondrial import inner membrane translocase subunit TIM17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN27] TIM17-1
AT1G20823.1 AT1G20823.1 RING-H2 finger protein ATL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM69] ATL80
AT1G21050.1 AT1G21050.1 Protein of unknown function, DUF617 [Source:TAIR;Acc:AT1G21050]
AT1G21120.1 AT1G21120.1 O-methyltransferase family protein [Source:TAIR;Acc:AT1G21120]
AT1G22460.1 AT1G22460.1 O-fucosyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:B7ZWR7] OFUT7
AT1G22650.1 AT1G22650.1 Probable alkaline/neutral invertase D [Source:UniProtKB/Swiss-Prot;Acc:F4I2X9] INVD
AT1G24140.1 AT1G24140.1 Metalloendoproteinase 3-MMP [Source:UniProtKB/Swiss-Prot;Acc:Q5XF51] 3MMP
AT1G24145.1 AT1G24145.1 At1g24145 [Source:UniProtKB/TrEMBL;Acc:Q8GYP2]
AT1G24147.1 AT1G24147.1 Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1G3U1]
AT1G24280.1 AT1G24280.1 Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WP00] G6PD3
AT1G24405.1 AT1G24405.1 F21J9.7 [Source:UniProtKB/TrEMBL;Acc:Q9FYM2]
AT1G25422.1 AT1G25422.1 Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1G3T8]
AT1G25550.1 AT1G25550.1 Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8] HHO3
AT1G26770.1 AT1G26770.1 Expansin [Source:UniProtKB/TrEMBL;Acc:F4HPC1] ATEXPA10
AT1G27170.1 AT1G27170.1 Transmembrane receptors / ATP binding protein [Source:UniProtKB/TrEMBL;Acc:F4HR53]
AT1G27740.1 AT1G27740.1 Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1] BHLH54
AT1G29440.1 AT1G29440.1 Auxin-responsive protein SAUR63 [Source:UniProtKB/Swiss-Prot;Acc:F4I1H5] SAUR63
AT1G29640.1 AT1G29640.1 At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7]
AT1G29910.1 AT1G29910.1 Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87] LHCB1.1
AT1G30370.1 AT1G30370.1 DLAH [Source:UniProtKB/TrEMBL;Acc:A0A178W2K8]
AT1G32380.1 AT1G32380.1 Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583] PRS2
AT1G32780.1 AT1G32780.1 Alcohol dehydrogenase-like 3 [Source:UniProtKB/Swiss-Prot;Acc:A1L4Y2]
AT1G32910.1 AT1G32910.1 HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAP9]
AT1G32920.1 AT1G32920.1 At1g32920/F9L11_25 [Source:UniProtKB/TrEMBL;Acc:Q93WI1]
AT1G32928.1 AT1G32928.1 Avr9/Cf-9 rapidly elicited protein [Source:UniProtKB/TrEMBL;Acc:Q56XA0]
AT1G32970.1 AT1G32970.1 Subtilisin-like protease SBT3.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAP4] SBT3.2
AT1G34060.1 AT1G34060.1 Tryptophan aminotransferase-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z38] TAR4
AT1G35230.1 AT1G35230.1 Classical arabinogalactan protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCE4] AGP5
AT1G35560.1 AT1G35560.1 Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0] TCP23
AT1G37130.1 AT1G37130.1 Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035] NIA2
AT1G43710.1 AT1G43710.1 SDC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA97] SDC
AT1G47395.1 AT1G47395.1 At1g47390 [Source:UniProtKB/TrEMBL;Acc:Q8GUL3]
AT1G49000.1 AT1G49000.1 At1g49000 [Source:UniProtKB/TrEMBL;Acc:Q9M9A2]
AT1G49200.1 AT1G49200.1 RING-H2 finger protein ATL75 [Source:UniProtKB/Swiss-Prot;Acc:Q94BY6] ATL75
AT1G49230.1 AT1G49230.1 RING-H2 finger protein ATL78 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQG7] ATL78
AT1G49500.1 AT1G49500.1 At1g49500/F13F21_6 [Source:UniProtKB/TrEMBL;Acc:Q9XIB7]
AT1G49860.1 AT1G49860.1 Glutathione S-transferase F14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C8] GSTF14
AT1G50110.1 AT1G50110.1 Branched-chain-amino-acid aminotransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPM9] BCAT6
AT1G50290.1 AT1G50290.1 At1g50290/F14I3_12 [Source:UniProtKB/TrEMBL;Acc:Q944R3]
AT1G50750.1 AT1G50750.1 Plant mobile domain protein family [Source:TAIR;Acc:AT1G50750]
AT1G52040.1 AT1G52040.1 Myrosinase-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV0] MBP1
AT1G54120.1 AT1G54120.1 F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0]
AT1G54970.1 AT1G54970.1 Proline-rich protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ35] PRP1
AT1G55580.1 AT1G55580.1 SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4] SCL18
AT1G55920.1 AT1G55920.1 Serine acetyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42588] SAT1
AT1G56250.1 AT1G56250.1 F-box protein VBF [Source:UniProtKB/Swiss-Prot;Acc:Q9C7K0] VBF
AT1G57630.1 AT1G57630.1 Disease resistance protein RPP1-WsB, putative [Source:UniProtKB/TrEMBL;Acc:Q9FVT9]
AT1G59740.1 AT1G59740.1 Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5] NPF4.3
AT1G59940.1 AT1G59940.1 response regulator 3 [Source:TAIR;Acc:AT1G59940] ARR3
AT1G59970.1 AT1G59970.1 Metalloendoproteinase 5-MMP [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUJ5] 5MMP
AT1G60050.1 AT1G60050.1 WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178WGH0]
AT1G61930.1 AT1G61930.1 At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698]
AT1G62300.1 AT1G62300.1 Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11] WRKY6
AT1G62420.1 AT1G62420.1 DUF506 family protein (DUF506) [Source:UniProtKB/TrEMBL;Acc:O48807]
AT1G62510.1 AT1G62510.1 Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SXE6]
AT1G63270.1 AT1G63270.1 ABC transporter I family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8T1] ABCI1
AT1G63580.1 AT1G63580.1 Probable cysteine-rich repeat secretory protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH42] CRRSP6
AT1G63930.1 AT1G63930.1 At1g63930 [Source:UniProtKB/TrEMBL;Acc:Q9CAK4] ROH1
AT1G63940.3 AT1G63940.3 MDAR6 [Source:UniProtKB/TrEMBL;Acc:A0A178WFH3] MDAR5
AT1G64190.1 AT1G64190.1 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69] PGD1
AT1G64700.1 AT1G64700.1 At1g64700 [Source:UniProtKB/TrEMBL;Acc:Q9XIS1]
AT1G65570.1 AT1G65570.1 F5I14.10 [Source:UniProtKB/TrEMBL;Acc:O04474]
AT1G65870.1 AT1G65870.1 Dirigent protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS03] DIR21
AT1G65900.1 AT1G65900.1 At1g65900/F12P19_7 [Source:UniProtKB/TrEMBL;Acc:Q94A98]
AT1G66100.1 AT1G66100.1 Probable thionin-2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D6]
AT1G66140.1 AT1G66140.1 Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263] ZFP4
AT1G66390.1 AT1G66390.1 Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3] MYB90
AT1G66440.1 AT1G66440.1 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9C704]
AT1G66600.1 AT1G66600.1 Probable WRKY transcription factor 63 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H5] WRKY63
AT1G67110.1 AT1G67110.1 Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW95] CYP735A2
AT1G67910.2 AT1G67910.2 AT1G67910 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V7]
AT1G67920.1 AT1G67920.1 At1g67920 [Source:UniProtKB/TrEMBL;Acc:Q9C9V8]
AT1G68238.1 AT1G68238.1 Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1G3X3]
AT1G68320.1 AT1G68320.1 Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7] MYB62
AT1G68500.1 AT1G68500.1 Uncharacterized protein At1g68500 [Source:UniProtKB/TrEMBL;Acc:Q84K42]
AT1G68620.1 AT1G68620.1 Probable carboxylesterase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX25] CXE6
AT1G68670.1 AT1G68670.1 Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3] HHO2
AT1G68825.1 AT1G68825.1 DVL5 [Source:UniProtKB/TrEMBL;Acc:Q6X5T8] DVL5
AT1G69150.1 AT1G69150.1 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4I0J7]
AT1G69440.1 AT1G69440.1 Protein argonaute 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C793] AGO7
AT1G69870.1 AT1G69870.1 Protein NRT1/ PTR FAMILY 2.13 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX77] NPF2.13
AT1G69930.1 AT1G69930.1 Glutathione S-transferase U11 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAS6] GSTU11
AT1G70260.1 AT1G70260.1 WAT1-related protein At1g70260 [Source:UniProtKB/Swiss-Prot;Acc:F4I5D5]
AT1G71520.1 AT1G71520.1 Ethylene-responsive transcription factor ERF020 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9I8] ERF020
AT1G72200.1 AT1G72200.1 RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40] ATL11
AT1G72220.1 AT1G72220.1 RING-H2 finger protein ATL54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFY8] ATL54
AT1G72300.1 AT1G72300.1 Leucine-rich repeat receptor-like protein kinase (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0LGI8] PSY1R
AT1G73000.1 AT1G73000.1 RCAR13 [Source:UniProtKB/TrEMBL;Acc:A0A178W862] PYL3
AT1G73220.1 AT1G73220.1 Organic cation/carnitine transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT6] OCT1
AT1G74650.1 AT1G74650.1 At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52] ATY13
AT1G74660.1 AT1G74660.1 Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51] MIF1
AT1G74750.1 AT1G74750.1 Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9]
AT1G74810.1 AT1G74810.1 Putative boron transporter 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSG5] BOR5
AT1G74930.1 AT1G74930.1 Ethylene-responsive transcription factor ERF018 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7L5] ERF018
AT1G75140.1 AT1G75140.1 Uncharacterized membrane protein At1g75140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRK5]
AT1G75490.1 AT1G75490.1 Dehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2] DREB2D
AT1G75580.1 AT1G75580.1 At1g75580 [Source:UniProtKB/TrEMBL;Acc:Q9LR00]
AT1G75590.1 AT1G75590.1 SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4HZ54]
AT1G76040.2 AT1G76040.2 calcium-dependent protein kinase 29 [Source:TAIR;Acc:AT1G76040] CPK29
AT1G76640.1 AT1G76640.1 Calcium-binding protein CML39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRE7] CML39
AT1G77400.1 AT1G77400.1 At1g77400 protein [Source:UniProtKB/TrEMBL;Acc:Q9FVW9]
AT1G77760.1 AT1G77760.1 Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8] NIA1
AT1G78050.1 AT1G78050.1 Phosphoglycerate/bisphosphoglycerate mutase [Source:UniProtKB/TrEMBL;Acc:F4I8M8] PGM
AT1G78090.1 AT1G78090.1 Trehalose-phosphate phosphatase B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9S4] TPPB
AT1G80310.1 AT1G80310.1 MOT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGR3] MOT2
AT1G80325.1 AT1G80325.1 other RNA [Source:TAIR;Acc:AT1G80325]
AT1G80440.1 AT1G80440.1 F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2]
AT1G80555.1 AT1G80555.1 Isocitrate/isopropylmalate dehydrogenase family protein [Source:TAIR;Acc:AT1G80555]
AT2G02980.1 AT2G02980.1 Pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LK93] PCMP-H26
AT2G03505.1 AT2G03505.1 At2g03505 [Source:UniProtKB/TrEMBL;Acc:Q6NPI4]
AT2G14820.1 AT2G14820.1 BTB/POZ domain-containing protein NPY2 [Source:UniProtKB/Swiss-Prot;Acc:O80970] NPY2
AT2G14920.1 AT2G14920.1 Cytosolic sulfotransferase 10 [Source:UniProtKB/Swiss-Prot;Acc:O82330] SOT10
AT2G15620.1 AT2G15620.1 Ferredoxin–nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161] NIR1
AT2G16060.1 AT2G16060.1 NSHB1 [Source:UniProtKB/TrEMBL;Acc:A0A384KL50] AHB1
AT2G16660.1 AT2G16660.1 At2g16660/T24I21.7 [Source:UniProtKB/TrEMBL;Acc:Q9SLF1]
AT2G17060.1 AT2G17060.1 Disease resistance protein (TIR-NBS-LRR class) family [Source:UniProtKB/TrEMBL;Acc:F4IMF2]
AT2G17820.1 AT2G17820.1 Histidine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXL4] AHK1
AT2G18620.1 AT2G18620.1 Geranylgeranyl pyrophosphate synthase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU77]
AT2G18660.1 AT2G18660.1 EG45-like domain containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV52] EGC2
AT2G19190.1 AT2G19190.1 Senescence-induced receptor-like serine/threonine-protein kinase [Source:UniProtKB/Swiss-Prot;Acc:O64483] SIRK
AT2G19590.1 AT2G19590.1 1-aminocyclopropane-1-carboxylate oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN4] ACO1
AT2G20520.1 AT2G20520.1 Fasciclin-like arabinogalactan protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIL7] FLA6
AT2G20670.1 AT2G20670.1 Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5]
AT2G21210.1 AT2G21210.1 SAUR-like auxin-responsive protein family [Source:TAIR;Acc:AT2G21210]
AT2G21560.1 AT2G21560.1 Nucleolar-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SIK3]
AT2G21900.1 AT2G21900.1 At2g21900 [Source:UniProtKB/TrEMBL;Acc:Q1LYW5] WRKY59
AT2G22200.1 AT2G22200.1 Ethylene-responsive transcription factor ERF056 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIE4] ERF056
AT2G22500.1 AT2G22500.1 Mitochondrial uncoupling protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJY5] PUMP5
AT2G23170.1 AT2G23170.1 Indole-3-acetic acid-amido synthetase GH3.3 [Source:UniProtKB/Swiss-Prot;Acc:O22190] GH3.3
AT2G24130.1 AT2G24130.1 Leucine-rich receptor-like protein kinase family protein [Source:TAIR;Acc:AT2G24130]
AT2G25680.1 AT2G25680.1 Molybdate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL95] MOT1
AT2G26380.1 AT2G26380.1 Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:O48705]
AT2G26695.1 AT2G26695.1 At2g26695 [Source:UniProtKB/TrEMBL;Acc:Q6ID73]
AT2G26710.1 AT2G26710.1 CYP734A1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRF1] CYP734A1
AT2G26820.1 AT2G26820.1 phloem protein 2-A3 [Source:TAIR;Acc:AT2G26820] ATPP2-A3
AT2G27510.1 AT2G27510.1 Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0] FD3
AT2G27830.1 AT2G27830.1 Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUY4]
AT2G28690.1 AT2G28690.1 TOX high mobility group box protein, putative (DUF1635) [Source:UniProtKB/TrEMBL;Acc:Q8L8B6]
AT2G28710.1 AT2G28710.1 At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97]
AT2G28780.1 AT2G28780.1 p-hydroxybenzoic acid efflux pump subunit [Source:UniProtKB/TrEMBL;Acc:Q84W96]
AT2G28890.1 AT2G28890.1 Probable protein phosphatase 2C 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV25] PLL4
AT2G29720.1 AT2G29720.1 FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:O82384] CTF2B
AT2G29730.1 AT2G29730.1 Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVN2] UGT71D1
AT2G30040.1 AT2G30040.1 Mitogen-activated protein kinase kinase kinase 14 [Source:UniProtKB/TrEMBL;Acc:O64741] MAPKKK14
AT2G30100.1 AT2G30100.1 Pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WNN7]
AT2G30230.1 AT2G30230.1 6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919]
AT2G30590.1 AT2G30590.1 Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336] WRKY21
AT2G30670.1 AT2G30670.1 Tropinone reductase homolog At2g30670 [Source:UniProtKB/Swiss-Prot;Acc:O49332]
AT2G30766.1 AT2G30766.1 Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q56Y35]
AT2G31940.1 AT2G31940.1 Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6]
AT2G31945.1 AT2G31945.1 At2g31940/F20M17.2 [Source:UniProtKB/TrEMBL;Acc:Q8RU85]
AT2G32530.1 AT2G32530.1 Cellulose synthase-like protein B3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX83] CSLB3
AT2G32610.1 AT2G32610.1 Cellulose synthase-like protein B1 [Source:UniProtKB/Swiss-Prot;Acc:O80898] CSLB1
AT2G32680.1 AT2G32680.1 Receptor like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O48849] AtRLP23
AT2G32870.1 AT2G32870.1 TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7]
AT2G32960.1 AT2G32960.1 Tyrosine-protein phosphatase DSP2 [Source:UniProtKB/Swiss-Prot;Acc:Q84MD6] DSP2
AT2G33550.1 AT2G33550.1 Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20] ASR3
AT2G33700.1 AT2G33700.1 Probable protein phosphatase 2C 27 [Source:UniProtKB/Swiss-Prot;Acc:P93006] PP2C27
AT2G34010.1 AT2G34010.1 Protein SPEAR2 [Source:UniProtKB/Swiss-Prot;Acc:F4IGU3] SPEAR2
AT2G34355.1 AT2G34355.1 At2g34355 [Source:UniProtKB/TrEMBL;Acc:Q501E0]
AT2G34430.1 AT2G34430.1 Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142] LHB1B1
AT2G34610.1 AT2G34610.1 Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8VYN4]
AT2G35270.1 AT2G35270.1 AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166] AHL21
AT2G35637.1 AT2G35637.1 other RNA [Source:TAIR;Acc:AT2G35637]
AT2G35820.1 AT2G35820.1 ureidoglycolate hydrolases [Source:TAIR;Acc:AT2G35820]
AT2G36050.1 AT2G36050.1 OFP15 [Source:UniProtKB/TrEMBL;Acc:A0A178VSX7] OFP15
AT2G36470.1 AT2G36470.1 DUF868 family protein, putative (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SJQ8]
AT2G36540.1 AT2G36540.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SJQ4]
AT2G36580.1 AT2G36580.1 Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178VX82]
AT2G36770.1 AT2G36770.1 Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNU5] UGT73C4
AT2G36970.1 AT2G36970.1 Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6X6] UGT86A1
AT2G37440.1 AT2G37440.1 Type I inositol polyphosphate 5-phosphatase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT19] IP5P8
AT2G37900.1 AT2G37900.1 Protein NRT1/ PTR FAMILY 5.6 [Source:UniProtKB/Swiss-Prot;Acc:P0CI03] NPF5.6
AT2G38170.3 AT2G38170.3 Vacuolar cation/proton exchanger [Source:UniProtKB/TrEMBL;Acc:B9DFT4] CAX1
AT2G38320.1 AT2G38320.1 Protein trichome birefringence-like 34 [Source:UniProtKB/Swiss-Prot;Acc:O80919] TBL34
AT2G38510.1 AT2G38510.1 Protein DETOXIFICATION 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH5] DTX53
AT2G38600.1 AT2G38600.1 HAD superfamily, subfamily IIIB acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q9ZVI2]
AT2G38640.1 AT2G38640.1 Protein LURP-one-related 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVI6]
AT2G39250.1 AT2G39250.1 AP2-like ethylene-responsive transcription factor SNZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV67] SNZ
AT2G39330.1 AT2G39330.1 jacalin-related lectin 23 [Source:TAIR;Acc:AT2G39330] JAL23
AT2G39370.1 AT2G39370.1 Probable membrane-associated kinase regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:O80624] MAKR4
AT2G39710.1 AT2G39710.1 Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:O22282]
AT2G40230.1 AT2G40230.1 HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9XEF2]
AT2G40750.1 AT2G40750.1 Probable WRKY transcription factor 54 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU8] WRKY54
AT2G41440.1 AT2G41440.1 unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Ha. [Source:TAIR;Acc:AT2G41440]
AT2G41480.1 AT2G41480.1 Peroxidase 25 [Source:UniProtKB/Swiss-Prot;Acc:O80822] PER25
AT2G42140.1 AT2G42140.1 VQ motif-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:O48522] VQ17
AT2G42350.1 AT2G42350.1 RING-H2 finger protein ATL40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLC4] ATL40
AT2G42600.1 AT2G42600.1 PPC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VV64] PPC2
AT2G42870.1 AT2G42870.1 Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0] PAR1
AT2G43760.1 AT2G43760.1 Molybdopterin synthase catalytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178VNE3] MOCS2
AT2G44578.1 AT2G44578.1 RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A8MS73]
AT2G44940.1 AT2G44940.1 Ethylene-responsive transcription factor ERF034 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBQ7] ERF034
AT2G45570.1 AT2G45570.1 Cytochrome P450 76C2 [Source:UniProtKB/Swiss-Prot;Acc:O64637] CYP76C2
AT2G46495.1 AT2G46495.1 Putative RING-H2 finger protein ATL21A [Source:UniProtKB/Swiss-Prot;Acc:P0CH01] ATL21A
AT2G46620.1 AT2G46620.1 AAA-ATPase At2g46620 [Source:UniProtKB/Swiss-Prot;Acc:F4IJ77]
AT2G47880.1 AT2G47880.1 Glutaredoxin-C13 [Source:UniProtKB/Swiss-Prot;Acc:O82255] GRXC13
AT2G48080.1 AT2G48080.1 Oxidoreductase, 2OG-Fe(II) oxygenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IN63]
AT3G01080.1 AT3G01080.1 WRKY DNA-binding protein 58 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLS8] WRKY58
AT3G02380.1 AT3G02380.1 Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502] COL2
AT3G02850.1 AT3G02850.1 SKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5] SKOR
AT3G02910.1 AT3G02910.1 Putative gamma-glutamylcyclotransferase At3g02910 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T3]
AT3G02980.1 AT3G02980.1 Histone acetyltransferase MCC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T9] MCC1
AT3G03910.1 AT3G03910.1 Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2] GSH3
AT3G04530.1 AT3G04530.1 Phosphoenolpyruvate carboxylase kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VK0] PPCK2
AT3G05327.1 AT3G05327.1 Cyclin [Source:UniProtKB/TrEMBL;Acc:Q1G3M7]
NA NA NA NA
AT3G05790.1 AT3G05790.1 Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7] LON4
AT3G05800.1 AT3G05800.1 Transcription factor bHLH150 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L6] BHLH150
AT3G06370.1 AT3G06370.1 NHX4 [Source:UniProtKB/TrEMBL;Acc:A0A384KPV5] NHX4
AT3G06460.1 AT3G06460.1 F24P17.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SQU9]
AT3G06490.1 AT3G06490.1 Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1] MYB108
AT3G06590.1 AT3G06590.1 Transcription factor bHLH148 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Z9] BHLH148
AT3G07070.1 AT3G07070.1 Probable serine/threonine-protein kinase PBL26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFT7] PBL26
AT3G07195.1 AT3G07195.1 RPM1-interacting protein 4 (RIN4) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ8]
AT3G07270.1 AT3G07270.1 GTP cyclohydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFV7] GCH1
AT3G07340.1 AT3G07340.1 Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2] BHLH62
AT3G07350.1 AT3G07350.1 F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1]
AT3G10120.1 AT3G10120.1 At3g10120 [Source:UniProtKB/TrEMBL;Acc:Q8GY70]
AT3G11410.1 AT3G11410.1 Protein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598] PP2CA
AT3G11580.1 AT3G11580.1 AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60]
AT3G13730.1 AT3G13730.1 CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8] CYP90D1
AT3G14210.1 AT3G14210.1 GDSL esterase/lipase ESM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJG3] ESM1
AT3G14260.1 AT3G14260.1 Protein LURP-one-related 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM1]
AT3G16150.1 AT3G16150.1 ASPGB1 [Source:UniProtKB/TrEMBL;Acc:A0A384KV24]
AT3G16210.1 AT3G16210.1 Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24]
AT3G16560.1 AT3G16560.1 Protein phosphatase 2C family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VFN3]
AT3G17510.1 AT3G17510.1 CBL-interacting serine/threonine-protein kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWC9] CIPK1
AT3G17520.1 AT3G17520.1 Late embryogenesis abundant protein (LEA) family protein [Source:UniProtKB/TrEMBL;Acc:F4J573]
AT3G18560.1 AT3G18560.1 AT3g18560/K24M9_5 [Source:UniProtKB/TrEMBL;Acc:Q9LII3]
AT3G18773.1 AT3G18773.1 RING-H2 finger protein ATL77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS99] ATL77
AT3G18830.1 AT3G18830.1 PMT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y2] PLT5
AT3G19030.1 AT3G19030.1 AT3g19030/K13E13_15 [Source:UniProtKB/TrEMBL;Acc:Q9LJ63]
AT3G19850.1 AT3G19850.1 BTB/POZ domain-containing protein At3g19850 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT24]
AT3G20160.1 AT3G20160.1 Geranylgeranyl pyrophosphate synthase 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LJY2]
AT3G21351.1 AT3G21351.1 Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:F4IXJ9]
AT3G21890.1 AT3G21890.1 BBX31 [Source:UniProtKB/TrEMBL;Acc:A0A178VEW7] MIP1B
AT3G22550.1 AT3G22550.1 FCS-Like Zinc finger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8L471] FLZ8
AT3G22942.1 AT3G22942.1 AtGG2 [Source:UniProtKB/TrEMBL;Acc:A0A178V974] GG2
AT3G23030.1 AT3G23030.1 Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54] IAA2
AT3G23120.1 AT3G23120.1 Receptor-like protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS79] AtRLP38
AT3G23210.1 AT3G23210.1 Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7] BHLH34
AT3G23550.1 AT3G23550.1 Protein DETOXIFICATION 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH3] DTX18
AT3G23880.1 AT3G23880.1 F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8]
AT3G24290.1 AT3G24290.1 Putative ammonium transporter 1 member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK16] AMT1-5
AT3G24510.1 AT3G24510.1 Defensin-like protein 259 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV55]
AT3G24520.1 AT3G24520.1 Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52] HSFC1
AT3G25190.1 AT3G25190.1 Vacuolar iron transporter homolog 2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF6]
AT3G25770.1 AT3G25770.1 AOC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VKE4] AOC2
AT3G25790.1 AT3G25790.1 Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00] HHO1
AT3G26090.1 AT3G26090.1 Regulator of G-protein signaling 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F2] RGS1
AT3G27170.1 AT3G27170.1 CLC-B [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6] CLC-B
AT3G28220.1 AT3G28220.1 AT3g28220/T19D11_3 [Source:UniProtKB/TrEMBL;Acc:Q9LHA6]
AT3G28510.1 AT3G28510.1 AAA-ATPase At3g28510 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH84]
AT3G28690.1 AT3G28690.1 Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0D2]
AT3G28740.1 AT3G28740.1 Cytochrome P450 81D11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA1] CYP81D11
AT3G28910.1 AT3G28910.1 Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7] MYB30
AT3G29034.1 AT3G29034.1 At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70]
AT3G29760.1 AT3G29760.1 Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRQ0]
AT3G43850.1 AT3G43850.1 Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3]
AT3G44800.1 AT3G44800.1 MATH domain and coiled-coil domain-containing protein At3g44800 [Source:UniProtKB/Swiss-Prot;Acc:F4J4A1]
AT3G44820.1 AT3G44820.1 BTB/POZ domain-containing protein At3g44820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC8]
AT3G45840.1 AT3G45840.1 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4J6S4]
AT3G46230.1 AT3G46230.1 17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036] HSP17.4A
AT3G46720.1 AT3G46720.1 UDP-glycosyltransferase 76E5 [Source:UniProtKB/Swiss-Prot;Acc:Q9STE6] UGT76E5
AT3G47090.1 AT3G47090.1 Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SD64]
AT3G47480.1 AT3G47480.1 Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89] CML47
AT3G47500.1 AT3G47500.1 Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3] CDF3
AT3G47520.1 AT3G47520.1 Malate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86] MDH
AT3G47980.1 AT3G47980.1 At3g47980 [Source:UniProtKB/TrEMBL;Acc:Q84MC3]
AT3G48360.1 AT3G48360.1 BTB/POZ and TAZ domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BN0] BT2
AT3G48920.1 AT3G48920.1 MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SMT1] AtMYB45
AT3G49190.1 AT3G49190.1 O-acyltransferase (WSD1-like) family protein [Source:UniProtKB/TrEMBL;Acc:Q9M3B3]
AT3G49690.1 AT3G49690.1 RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29] RAX3
AT3G49760.1 AT3G49760.1 At3g49760 [Source:UniProtKB/TrEMBL;Acc:Q29PT3] AtbZIP5
AT3G49940.1 AT3G49940.1 LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23] LBD38
AT3G49970.1 AT3G49970.1 Putative BTB/POZ domain-containing protein At3g49970 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN21]
AT3G49980.1 AT3G49980.1 F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP00]
AT3G50750.1 AT3G50750.1 BEH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA20] BEH1
AT3G50800.1 AT3G50800.1 Uncharacterized protein At3g50800 [Source:UniProtKB/TrEMBL;Acc:Q9SVL8]
AT3G50870.1 AT3G50870.1 GATA transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC79] GATA18
AT3G50900.1 AT3G50900.1 At3g50900 [Source:UniProtKB/TrEMBL;Acc:Q9SVK9]
AT3G50910.1 AT3G50910.1 AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2]
AT3G52360.1 AT3G52360.1 Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FT46]
AT3G53150.1 AT3G53150.1 UDP-glucosyl transferase 73D1 [Source:TAIR;Acc:AT3G53150] UGT73D1
AT3G54830.1 AT3G54830.1
AT3G54990.1 AT3G54990.1 AP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68] SMZ
AT3G56400.1 AT3G56400.1 Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00] WRKY70
AT3G57157.1 AT3G57157.1 other RNA [Source:TAIR;Acc:AT3G57157]
AT3G57920.1 AT3G57920.1 Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6] SPL15
AT3G59340.1 AT3G59340.1 Solute carrier family 35 protein (DUF914) [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLD6]
AT3G59880.1 AT3G59880.1 Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q5BPM7]
AT3G59940.1 AT3G59940.1 F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1] SKIP20
AT3G60120.1 AT3G60120.1 Beta-glucosidase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1D1] BGLU27
AT3G61460.1 AT3G61460.1 BRH1 RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q9XF92] BRH1
AT3G61890.1 AT3G61890.1 HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2] ATHB-12
AT3G62550.1 AT3G62550.1 Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93W91]
AT3G62930.1 AT3G62930.1 Monothiol glutaredoxin-S6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC8] GRXS6
AT3G62960.1 AT3G62960.1 Glutaredoxin-C14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC5] GRXC14
AT3G63110.1 AT3G63110.1 IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2] IPT3
AT4G00416.1 AT4G00416.1 Methyl-CpG-binding domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSK1] MBD3
AT4G00940.1 AT4G00940.1 Dof zinc finger protein DOF4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M161] DOF4.1
AT4G01360.1 AT4G01360.1 BPS1-like protein [Source:UniProtKB/TrEMBL;Acc:F4JI15]
AT4G01630.1 AT4G01630.1 Expansin [Source:UniProtKB/TrEMBL;Acc:A0A178UWZ2] EXPA17
AT4G01840.1 AT4G01840.1 Two-pore potassium channel 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9S6Z8] TPK5
AT4G02380.1 AT4G02380.1 senescence-associated gene 21 [Source:TAIR;Acc:AT4G02380] SAG21
AT4G03400.1 AT4G03400.1 Indole-3-acetic acid-amido synthetase GH3.10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNS2] DFL2
AT4G04330.1 AT4G04330.1 Chaperonin-like RBCX protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AU9] RBCX1
AT4G04490.1 AT4G04490.1 Cysteine-rich receptor-like protein kinase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC6] CRK36
AT4G04540.1 AT4G04540.1 Putative cysteine-rich receptor-like protein kinase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS7] CRK39
AT4G04745.1 AT4G04745.1 At4g04745 [Source:UniProtKB/TrEMBL;Acc:Q6NL28]
AT4G05070.1 AT4G05070.1 AT4g05070 protein [Source:UniProtKB/TrEMBL;Acc:Q9S9T1]
AT4G05390.1 AT4G05390.1 Ferredoxin–NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6] RFNR1
AT4G05390.2 AT4G05390.2 Ferredoxin–NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6] RFNR1
AT4G09000.2 AT4G09000.2 General regulatory factor 1 [Source:UniProtKB/TrEMBL;Acc:F4JJ94] GRF1
AT4G09620.1 AT4G09620.1 Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JK28]
AT4G11050.1 AT4G11050.1 Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0] AtGH9C3
AT4G11460.1 AT4G11460.1 Putative cysteine-rich receptor-like protein kinase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDT0] CRK30
AT4G13300.1 AT4G13300.1 (Z)-gamma-bisabolene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K1] TPS13
AT4G13310.1 AT4G13310.1 Cytochrome P450 71A20 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K2] CYP71A20
AT4G13390.1 AT4G13390.1 Extensin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T0L0]
NA.1 NA NA NA
AT4G13620.1 AT4G13620.1 Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0] ERF062
AT4G13890.1 AT4G13890.1 Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4] SHM5
AT4G14365.1 AT4G14365.1 Putative E3 ubiquitin-protein ligase XBAT34 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH0] XBAT34
AT4G14480.1 AT4G14480.1 Serine/threonine-protein kinase BLUS1 [Source:UniProtKB/Swiss-Prot;Acc:O23304] BLUS1
AT4G15680.1 AT4G15680.1 Monothiol glutaredoxin-S4 [Source:UniProtKB/Swiss-Prot;Acc:O23419] GRXS4
AT4G15700.1 AT4G15700.1 Monothiol glutaredoxin-S3 [Source:UniProtKB/Swiss-Prot;Acc:O23421] GRXS3
AT4G15740.1 AT4G15740.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:O23425]
AT4G17550.1 AT4G17550.1 Putative glycerol-3-phosphate transporter 4 [Source:UniProtKB/Swiss-Prot;Acc:O23596]
AT4G17800.1 AT4G17800.1 AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620] AHL23
AT4G18340.1 AT4G18340.1 Beta-1,3-glucanase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L837]
AT4G19690.2 AT4G19690.2 Fe(2+) transport protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38856] IRT1
AT4G21120.1 AT4G21120.1 CAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYU0] CAT1
AT4G23220.1 AT4G23220.1 Cysteine-rich receptor-like protein kinase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H199] CRK14
AT4G23230.1 AT4G23230.1 Cysteine-rich receptor-like protein kinase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4G6] CRK15
AT4G25140.1 AT4G25140.1 Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3] OLEO1
AT4G25470.1 AT4G25470.1 C-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9] DREB1C
AT4G25490.1 AT4G25490.1 DRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3] DREB1B
AT4G25835.1 AT4G25835.1 AAA-ATPase At4g25835 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY66]
AT4G26200.1 AT4G26200.1 1-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4] ACS7
AT4G27310.1 AT4G27310.1 BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3]
AT4G27950.1 AT4G27950.1 Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3] CRF4
AT4G28110.1 AT4G28110.1 MYB41 [Source:UniProtKB/TrEMBL;Acc:A0A178V452] AtMYB41
AT4G30110.1 AT4G30110.1 Cadmium/zinc-transporting ATPase HMA2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZW4] HMA2
AT4G30230.1 AT4G30230.1 Uncharacterized protein AT4g30230 [Source:UniProtKB/TrEMBL;Acc:Q9SUM1]
AT4G30350.1 AT4G30350.1 Protein SMAX1-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0C5] SMXL2
AT4G30450.1 AT4G30450.1 At4g30450 [Source:UniProtKB/TrEMBL;Acc:Q9M0B5]
AT4G30460.1 AT4G30460.1 Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B4]
AT4G31330.1 AT4G31330.1 Uncharacterized protein At4g31330 [Source:UniProtKB/TrEMBL;Acc:Q9C5C1]
AT4G31730.1 AT4G31730.1 Protein GLUTAMINE DUMPER 1 [Source:UniProtKB/Swiss-Prot;Acc:O81775] GDU1
AT4G31910.1 AT4G31910.1 Brassinosteroid-related acyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ58] BAT1
AT4G32950.1 AT4G32950.1 Probable protein phosphatase 2C 61 [Source:UniProtKB/Swiss-Prot;Acc:O82637]
AT4G33905.1 AT4G33905.1 AT4g33900 [Source:UniProtKB/TrEMBL;Acc:Q9FPH4]
AT4G33960.1 AT4G33960.1 At4g33960 [Source:UniProtKB/TrEMBL;Acc:O81764]
AT4G34135.1 AT4G34135.1 UDP-glucosyl transferase 73B2 [Source:UniProtKB/Swiss-Prot;Acc:Q94C57] UGT73B2
AT4G34380.1 AT4G34380.1 At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03]
AT4G34419.1 AT4G34419.1 Uncharacterized protein At4g34420 [Source:UniProtKB/TrEMBL;Acc:Q67YQ7]
AT4G34560.1 AT4G34560.1 Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8L623]
AT4G34740.1 AT4G34740.1 Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UYQ3] ASE2
AT4G34760.1 AT4G34760.1 Auxin-responsive protein SAUR50 [Source:UniProtKB/Swiss-Prot;Acc:O65695] SAUR50
AT4G34770.1 AT4G34770.1 SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9SW57]
AT4G34790.1 AT4G34790.1 At4g34790 [Source:UniProtKB/TrEMBL;Acc:Q9SW55]
AT4G34800.1 AT4G34800.1 SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9SW54]
AT4G34810.1 AT4G34810.1 SAUR-like auxin-responsive protein family [Source:TAIR;Acc:AT4G34810]
AT4G34860.1 AT4G34860.1 A/N-InvB [Source:UniProtKB/TrEMBL;Acc:A0A178V2X0] INVB
AT4G34950.1 AT4G34950.1 Major facilitator superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SW40]
AT4G35180.1 AT4G35180.1 Lysine histidine transporter-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WE9] LHT7
AT4G35390.1 AT4G35390.1 AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1] AHL25
AT4G36430.1 AT4G36430.1 Peroxidase 49 [Source:UniProtKB/Swiss-Prot;Acc:O23237] PER49
AT4G36670.1 AT4G36670.1 At4g36670 [Source:UniProtKB/TrEMBL;Acc:A4VCM1] PLT6
AT4G36740.1 AT4G36740.1 homeobox protein 40 [Source:TAIR;Acc:AT4G36740] HB-5
AT4G36850.1 AT4G36850.1 PQ-loop repeat family protein / transmembrane family protein [Source:UniProtKB/TrEMBL;Acc:Q94AH7]
AT4G36880.1 AT4G36880.1 CP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UST0] CP1
AT4G36950.1 AT4G36950.1 Mitogen-activated protein kinase kinase kinase 21 [Source:UniProtKB/TrEMBL;Acc:Q6K1M3] MAPKKK21
AT4G37240.1 AT4G37240.1 HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56]
AT4G37540.1 AT4G37540.1 LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8] LBD39
AT4G37610.1 AT4G37610.1 BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98] BT5
NA.2 NA NA NA
AT4G38340.1 AT4G38340.1 Protein NLP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVF1] NLP3
AT4G39190.1 AT4G39190.1 Nucleolar-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T028]
AT4G39410.1 AT4G39410.1 Probable WRKY transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVB7] WRKY13
AT4G39780.1 AT4G39780.1 Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665] ERF060
AT4G40070.1 AT4G40070.1 RING-H2 finger protein ATL32 [Source:UniProtKB/Swiss-Prot;Acc:Q8W571] ATL32
AT5G01280.1 AT5G01280.1 BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Ha. [Source:TAIR;Acc:AT5G01280]
AT5G01740.1 AT5G01740.1 AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2]
AT5G03330.1 AT5G03330.1 At5g03330 [Source:UniProtKB/TrEMBL;Acc:Q9LZF7]
AT5G03995.1 AT5G03995.1 Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0WRE7]
AT5G04190.1 AT5G04190.1 Protein PHYTOCHROME KINASE SUBSTRATE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE2] PKS4
AT5G04390.1 AT5G04390.1 C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31]
AT5G04840.1 AT5G04840.1 At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9]
AT5G05250.1 AT5G05250.1 AT5g05250/K18I23_5 [Source:UniProtKB/TrEMBL;Acc:Q9FLC9]
AT5G08010.1 AT5G08010.1 Uncharacterized protein F13G24.210 [Source:UniProtKB/TrEMBL;Acc:Q9SD83]
AT5G08250.1 AT5G08250.1 Cytochrome P450 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEY2]
AT5G08360.1 AT5G08360.1 At5g08360 [Source:UniProtKB/TrEMBL;Acc:Q84MC6]
AT5G09800.1 AT5G09800.1 U-box domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE3] PUB28
AT5G10030.1 AT5G10030.1 At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3] TGA4
AT5G10210.1 AT5G10210.1 At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09]
AT5G10570.1 AT5G10570.1 Transcription factor bHLH61 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA9] BHLH61
AT5G10820.1 AT5G10820.1 Probable folate-biopterin transporter 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEV7]
AT5G12030.1 AT5G12030.1 17.7 kDa class II heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:O81822] HSP17.7
AT5G13110.1 AT5G13110.1 Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99] G6PD2
AT5G13180.1 AT5G13180.1 NAC domain-containing protein 83 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY93] NAC083
AT5G13420.1 AT5G13420.1 Aldolase-type TIM barrel family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYR4]
AT5G13900.1 AT5G13900.1 Lipid transfer-like protein VAS [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY3] VAS
AT5G14760.1 AT5G14760.1 L-aspartate oxidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AY1] AO
AT5G15060.1 AT5G15060.1 LOB domain-containing protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P59469] LBD34
AT5G15330.1 AT5G15330.1 SPX domain gene 4 [Source:TAIR;Acc:AT5G15330] ATSPX4
AT5G15830.1 AT5G15830.1 At5g15830 [Source:UniProtKB/TrEMBL;Acc:Q9LFU3] AtbZIP3
AT5G17860.1 AT5G17860.1 Cation/calcium exchanger 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP1] CCX1
AT5G17880.1 AT5G17880.1 Disease resistance-like protein CSA1 [Source:UniProtKB/Swiss-Prot;Acc:F4KIF3] CSA1
AT5G18840.1 AT5G18840.1 Sugar transporter ERD6-like 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBI9]
AT5G19190.1 AT5G19190.1 Uncharacterized protein At5g19190/T24G5_90 [Source:UniProtKB/TrEMBL;Acc:Q8GYS0]
AT5G19260.1 AT5G19260.1 Protein FANTASTIC FOUR 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMR8] FAF3
AT5G19970.1 AT5G19970.1 unknown protein; Ha. [Source:TAIR;Acc:AT5G19970]
AT5G20540.1 AT5G20540.1 Protein Brevis radix-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ92] BRXL4
NA.3 NA NA NA
AT5G20885.1 AT5G20885.1 AT5g20880/F22D1_50 [Source:UniProtKB/TrEMBL;Acc:Q93ZD8]
AT5G22520.1 AT5G22520.1 At5g22520 [Source:UniProtKB/TrEMBL;Acc:Q9FK87]
AT5G22610.1 AT5G22610.1 Putative F-box/FBD/LRR-repeat protein At5g22610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK0]
AT5G23190.1 AT5G23190.1 Cytochrome P450 86B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMY1] CYP86B1
AT5G24660.1 AT5G24660.1 Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9] LSU2
AT5G26010.1 AT5G26010.1 Probable protein phosphatase 2C 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGZ9]
AT5G26200.1 AT5G26200.1 AT5g26200/T19G15_50 [Source:UniProtKB/TrEMBL;Acc:Q93YZ9]
NA.4 NA NA NA
AT5G28510.1 AT5G28510.1 Beta-glucosidase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR7] BGLU24
NA.5 NA NA NA
AT5G35190.1 AT5G35190.1 Proline-rich extensin-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHS1]
AT5G35870.1 AT5G35870.1 Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFL6]
AT5G37260.1 AT5G37260.1 Protein REVEILLE 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K5X6] RVE2
AT5G38450.1 AT5G38450.1 Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9FF18] CYP735A1
AT5G39080.1 AT5G39080.1 Acyltransferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FID2]
AT5G39610.1 AT5G39610.1 NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0] NAC92
AT5G40470.1 AT5G40470.1 AT5g40470/K21I16_20 [Source:UniProtKB/TrEMBL;Acc:Q9FI63]
AT5G40850.1 AT5G40850.1 AT5g40850/MHK7_8 [Source:UniProtKB/TrEMBL;Acc:Q42606] UPM1
AT5G40850.2 AT5G40850.2 AT5g40850/MHK7_8 [Source:UniProtKB/TrEMBL;Acc:Q42606] UPM1
AT5G40990.1 AT5G40990.1 GDSL esterase/lipase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLN0] GLIP1
AT5G41670.2 AT5G41670.2 6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8] PGD3
AT5G42630.1 AT5G42630.1 Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5] KAN4
AT5G42830.1 AT5G42830.1 HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FMN6]
AT5G42930.1 AT5G42930.1 Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4J2]
AT5G42990.1 AT5G42990.1 Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0] UBC18
AT5G43180.1 AT5G43180.1 At5g43180 [Source:UniProtKB/TrEMBL;Acc:Q9LUH6]
AT5G43390.1 AT5G43390.1 Emb [Source:UniProtKB/TrEMBL;Acc:Q9LSX2]
AT5G43890.1 AT5G43890.1 Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178UK83] YUC5
AT5G44350.1 AT5G44350.1 Ethylene-regulated nuclear protein ERT2-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FKV3]
AT5G44910.1 AT5G44910.1 Similarity to disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9FLA7]
AT5G45820.1 AT5G45820.1 CBL-interacting serine/threonine-protein kinase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ54] CIPK20
AT5G46590.1 AT5G46590.1 NAC domain-containing protein 96 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS24] anac096
AT5G49360.1 AT5G49360.1 Beta-D-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY1] BXL1
AT5G50210.1 AT5G50210.1 SUFE3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIT6] QS
AT5G50800.1 AT5G50800.1 Bidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:A0A178UJY5] SWEET13
AT5G51050.1 AT5G51050.1 Mitochondrial substrate carrier family protein [Source:TAIR;Acc:AT5G51050]
AT5G51830.1 AT5G51830.1 Probable fructokinase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH8]
AT5G51990.1 AT5G51990.1 C-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26] DREB1D
AT5G52670.1 AT5G52670.1 Copper transport protein family [Source:UniProtKB/TrEMBL;Acc:Q9LTF0]
AT5G52760.1 AT5G52760.1 Heavy metal-associated isoprenylated plant protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTE1] HIPP14
AT5G53290.1 AT5G53290.1 Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12] CRF3
AT5G54020.1 AT5G54020.1 Cysteine/Histidine-rich C1 domain family protein [Source:TAIR;Acc:AT5G54020]
AT5G54030.1 AT5G54030.1 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FN24]
AT5G54170.1 AT5G54170.1 Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JYV3]
AT5G54660.1 AT5G54660.1 21.7 kDa class VI heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT9] HSP21.7
AT5G55110.1 AT5G55110.1 Stigma-specific STIG1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ0]
AT5G57685.1 AT5G57685.1 Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5] GDU3
AT5G58320.2 AT5G58320.2 Protein NETWORKED 4A [Source:UniProtKB/Swiss-Prot;Acc:F4KEW8] NET4A
AT5G58360.1 AT5G58360.1 Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4] OFP3
AT5G58900.1 AT5G58900.1 Homeodomain-like transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q9FIL9]
AT5G59080.1 AT5G59080.1 Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGU5]
AT5G59220.1 AT5G59220.1 Probable protein phosphatase 2C 78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIF5] SAG113
AT5G59340.1 AT5G59340.1 WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1] WOX2
AT5G59930.1 AT5G59930.1 Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJE3]
AT5G60770.1 AT5G60770.1 High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8] NRT2.4
AT5G61010.1 AT5G61010.1 Exocyst complex component EXO70E2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNR3] ATEXO70E2
AT5G62160.1 AT5G62160.1 ZIP12 [Source:UniProtKB/TrEMBL;Acc:A0A178UGP0] ZIP12
AT5G62430.1 AT5G62430.1 Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3] CDF1
AT5G62900.1 AT5G62900.1 Basic-leucine zipper transcription factor K [Source:UniProtKB/TrEMBL;Acc:Q9FM06]
AT5G63160.1 AT5G63160.1 BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7] BT1
AT5G64750.1 AT5G64750.1 Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8] ABR1
AT5G64810.1 AT5G64810.1 Probable WRKY transcription factor 51 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU9] WRKY51
AT5G64890.1 AT5G64890.1 Elicitor peptide 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV88] PEP2
AT5G65030.1 AT5G65030.1 At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76]
AT5G65140.1 AT5G65140.1 Probable trehalose-phosphate phosphatase J [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ05] TPPJ
AT5G65790.1 AT5G65790.1 At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538] ATMYB68
AT5G65980.1 AT5G65980.1 Protein PIN-LIKES 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKY4] PILS7
AT5G66580.1 AT5G66580.1 Uncharacterized protein At5g66580 [Source:UniProtKB/TrEMBL;Acc:Q9FJY2]
AT5G67080.1 AT5G67080.1 Mitogen-activated protein kinase kinase kinase 19 [Source:UniProtKB/TrEMBL;Acc:Q9FHA5] MAPKKK19
AT5G67190.1 AT5G67190.1 Ethylene-responsive transcription factor ERF010 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH94] ERF010
AT5G67420.1 AT5G67420.1 LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11] LBD37
ensembl_transcript_id description external_gene_name
AT1G76040.2 AT1G76040.2 calcium-dependent protein kinase 29 [Source:TAIR;Acc:AT1G76040] CPK29
AT1G76640.1 AT1G76640.1 Calcium-binding protein CML39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRE7] CML39
AT3G47480.1 AT3G47480.1 Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89] CML47
AT4G15740.1 AT4G15740.1 Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:O23425]
AT5G17860.1 AT5G17860.1 Cation/calcium exchanger 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP1] CCX1
ensembl_transcript_id description external_gene_name
AT1G08090.1 AT1G08090.1 High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811] NRT2.1
AT1G08100.1 AT1G08100.1 NRT2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F7] NRT2.2
AT1G12940.1 AT1G12940.1 High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5] NRT2.5
AT5G60770.1 AT5G60770.1 High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8] NRT2.4
ensembl_transcript_id description external_gene_name
AT4G38340.1 AT4G38340.1 Protein NLP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVF1] NLP3
ensembl_transcript_id description external_gene_name
AT1G37130.1 AT1G37130.1 Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035] NIA2
AT1G77760.1 AT1G77760.1 Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8] NIA1
AT2G15620.1 AT2G15620.1 Ferredoxin–nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161] NIR1
ensembl_transcript_id description external_gene_name
AT1G67110.1 AT1G67110.1 Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW95] CYP735A2
AT5G38450.1 AT5G38450.1 Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9FF18] CYP735A1
 

A work by Océane Cassan

oceane.cassan@supagro.fr