On loade la matrice de reads par échantillon et par gènes obtenue par htseq-count. On supprime les dernières lignes qui correspondent aux reads non identifiés comme des gènes ou comme ambigus.
data = read.table("quantif_all_unstranded.txt", h = F)
colnames(data) <- c("Gene", "WT.K1", "WT.K2", "WT.N1", "WT.N2", "WT.K3", "WT.N3")
rownames(data) = data$Gene
data = dplyr::select(data, -c("Gene"))
genes = which(!(grepl("__", rownames(data))))
data = data[genes, ]
data = data[, sort(colnames(data))]
kable(head(data))| WT.K1 | WT.K2 | WT.K3 | WT.N1 | WT.N2 | WT.N3 | |
|---|---|---|---|---|---|---|
| AT1G01010.1 | 291 | 224 | 90 | 211 | 199 | 286 |
| AT1G01020.1 | 3 | 3 | 0 | 0 | 0 | 1 |
| AT1G01020.2 | 1 | 1 | 1 | 2 | 1 | 5 |
| AT1G01030.1 | 121 | 76 | 22 | 52 | 47 | 52 |
| AT1G01040.1 | 6 | 11 | 2 | 8 | 12 | 14 |
| AT1G01040.2 | 0 | 0 | 0 | 0 | 0 | 0 |
On rensigne le design et le type d’échantillons.
design = data.frame(row.names = colnames(data), condition = c("untreated", "untreated",
"untreated", "treated", "treated", "treated"), libType = rep("single-end",
6))
kable(design)| condition | libType | |
|---|---|---|
| WT.K1 | untreated | single-end |
| WT.K2 | untreated | single-end |
| WT.K3 | untreated | single-end |
| WT.N1 | treated | single-end |
| WT.N2 | treated | single-end |
| WT.N3 | treated | single-end |
D’après les 2 papiers de review lus (et détails techniques sur https://hbctraining.github.io/DGE_workshop/lessons/02_DGE_count_normalization.html) :
RPKM non adaptés pour la DE : Permettent la comparaison entre gènes d’un même échantillon en corrigeant la profondeur de séquençage et la taille des gènes, mais ne permet pas de comparer des échantillons différents. (La somme des counts normalisés en RPKM ne sera pas la même pour deux échantillons). De plus, on compare des gènes identiques uniquement, donc la taille n’est pas importante.
DESeq : la médiane de ratios : On calcule un sizeFactor propre à chaque échantillon pour corriger la profondeur de séquençage. On divise chaque count par la moyenne géométrique des counts de son gène parmis tous les échantillons (Comme si on créait un nouvel échantillon de pseudo-référence. Les ratios dans un même échantillon devraient être similaires entre la plupart des gènes, qui sont en majorité non differentiellement exprimés). Le size factor d’un échantillon est la médiane de ces ratios pour tous les gènes. Pour normaliser, on divise tous les counts d’un échantillon par son sizeFactor. (On ne considère pas dans la médiane les gènes ayant une moyenne géométrique de 0)
TMM :
à voir avec EdgeR.
cds = estimateSizeFactors(cds)
keep <- rowSums(counts(cds)) >= 10
cds <- cds[keep, ]
sizeFactors(cds) WT.K1 WT.K2 WT.K3 WT.N1 WT.N2 WT.N3
0.5807179 1.4086346 0.4817462 1.3604623 1.2840339 1.5661509
par(mfrow = c(1, 2))
heatmap(counts(cds)[sample(rownames(counts(cds, normalized = FALSE)), 500),
], main = "Sans normalisation")heatmap(counts(cds, normalized = TRUE)[sample(rownames(counts(cds, normalized = TRUE)),
500), ], main = "Avec normalisation")The variance seen between counts is the sum of two components: the sample-to-sample variation just mentioned, and the uncertaintyin measuring a concentration by counting reads. The latter, known as shot noise or Poisson noise, is the dominatingnoise source for lowly expressed genes. The former dominates for highly expressed genes. The sum of both, shot noiseand dispersion, is considered in the differential expression inference.Hence, the variancevof count values is modelled as \(v = s\mu + \alpha s^2\mu^2\),
where \(\mu\) is the expected normalized count value (estimated by the average normalized count value),\(s\) is the size factor for the sample under consideration, and \(\alpha\) is the dispersion value for the gene under consideration.
# Analyse d’expression différentielle
On continue maintenant avec DESeq2, qui utilise le même test statistique que DESeq mais avec des améliorations pour les estimations et le GLM. Test : maintenant que les variances ont été estimées, il devient facile de comparer les conditions avec un test, rbinom.
A decrire mieux et parler des modèles, tout ça tout ça.
On construit le dataset, puis on enlève les lignes dont la somme des reads ne dépasse pas 10.
dds <- DESeq2::DESeqDataSetFromMatrix(countData = data, colData = design, design = ~condition)
keep <- rowSums(counts(dds)) >= 10
dds <- dds[keep, ]
dds$condition <- relevel(dds$condition, ref = "untreated")
dds <- DESeq2::DESeq(dds)
res <- results(dds)
resLFC <- lfcShrink(dds, coef = "condition_treated_vs_untreated", type = "apeglm")
resOrdered <- res[order(res$padj), ]
sum(res$padj < 0.05, na.rm = TRUE)[1] 1362
On a peu de gènes DE, seulement 48 avec un seuil à 5% de p-value, et 60 à 10%.
Visu du gènes le plus différentiellement exprimé :
d <- plotCounts(dds, gene = which.min(res$padj), intgroup = "condition", returnData = TRUE)
ggplot(d, aes(x = condition, y = count)) + geom_point(position = position_jitter(w = 0.1,
h = 0)) + scale_y_log10(breaks = c(25, 100, 400))On essaie de voir ce qui pourrait être étrange dans les données pour avoir si peu de gènes :
[1] 968
En prenant une condition sur le log2FoldChange on a beaucoup plus de gènes DE. Affichage en heatmap des gènes les plus différentiellement exprimés.
par(mfrow = c(1, 2))
thr = 0.05
res = na.omit(res)
DEgenes = rownames(res[abs(res$log2FoldChange) > 1, ])
mat = counts(dds, normalized = TRUE)[DEgenes, ]
heatmap(mat, main = "abs(Log2FoldChange) > 1 ")DEgenes = rownames(res[res$padj < thr, ])
mat = counts(dds, normalized = TRUE)[DEgenes, ]
heatmap(mat, main = "Significatifs")DEgenes_pval = rownames(res[res$padj < thr, ])
DEgenes_lfc = rownames(res[abs(res$log2FoldChange) > 1, ])
DEgenes = intersect(DEgenes_pval, DEgenes_lfc)
mat = counts(dds, normalized = TRUE)[DEgenes, ]
heatmap(mat, main = "Juste les significatifs uprégulés")On s’intéresse maintenant à la liste de gènes sélectionnés et à leur ontologie.
mart = useMart(biomart = "plants_mart", host = "plants.ensembl.org", dataset = "athaliana_eg_gene")
results <- getBM(filters = "ensembl_transcript_id", attributes = c("ensembl_transcript_id",
"description", "external_gene_name"), values = DEgenes, mart = mart)
rownames(results) = results$ensembl_transcript_id
r = results[DEgenes, ]
kable(r, caption = "Genes DE et leur GO")| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT1G02030.1 | AT1G02030.1 | Zinc finger protein ZAT1 [Source:UniProtKB/Swiss-Prot;Acc:Q39092] | ZAT1 |
| AT1G02310.1 | AT1G02310.1 | MAN1 [Source:UniProtKB/TrEMBL;Acc:A0A178WL81] | MAN1 |
| AT1G02880.1 | AT1G02880.1 | thiamin pyrophosphokinase1 [Source:TAIR;Acc:AT1G02880] | TPK1 |
| AT1G04180.1 | AT1G04180.1 | Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178WB22] | YUC9 |
| AT1G05675.1 | AT1G05675.1 | Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:A0A1W6AJW6] | UGT74E1 |
| AT1G06160.1 | AT1G06160.1 | Ethylene-responsive transcription factor ERF094 [Source:UniProtKB/Swiss-Prot;Acc:Q9LND1] | ERF094 |
| AT1G07050.1 | AT1G07050.1 | CCT motif family protein [Source:TAIR;Acc:AT1G07050] | |
| AT1G07160.1 | AT1G07160.1 | PP2C-type phosphatase AP2C2 [Source:UniProtKB/TrEMBL;Acc:F6LPR6] | |
| AT1G08090.1 | AT1G08090.1 | High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811] | NRT2.1 |
| AT1G08100.1 | AT1G08100.1 | NRT2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F7] | NRT2.2 |
| AT1G08400.1 | AT1G08400.1 | RINT1-like protein MAG2L [Source:UniProtKB/Swiss-Prot;Acc:Q8GXP1] | MAG2L |
| AT1G08650.1 | AT1G08650.1 | Phosphoenolpyruvate carboxylase kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SPK4] | PPCK1 |
| AT1G12200.1 | AT1G12200.1 | Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178W1K3] | |
| AT1G12820.1 | AT1G12820.1 | Protein AUXIN SIGNALING F-BOX 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPW7] | AFB3 |
| AT1G12940.1 | AT1G12940.1 | High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5] | NRT2.5 |
| AT1G13300.1 | AT1G13300.1 | Transcription factor HRS1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX67] | HRS1 |
| AT1G13420.1 | AT1G13420.1 | Cytosolic sulfotransferase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX56] | SOT8 |
| AT1G13430.1 | AT1G13430.1 | Cytosolic sulfotransferase 9 [Source:UniProtKB/Swiss-Prot;Acc:Q9FX55] | STO9 |
| AT1G14280.1 | AT1G14280.1 | Protein PHYTOCHROME KINASE SUBSTRATE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9T4] | PKS2 |
| AT1G14340.1 | AT1G14340.1 | RNA-binding (RRM/RBD/RNP motifs) family protein [Source:UniProtKB/TrEMBL;Acc:Q949S4] | |
| AT1G14890.1 | AT1G14890.1 | Plant invertase/pectin methylesterase inhibitor superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4HXW0] | |
| AT1G15550.1 | AT1G15550.1 | Gibberellin 3-beta-dioxygenase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q39103] | GA3OX1 |
| AT1G16090.1 | AT1G16090.1 | Wall associated kinase-like 7 [Source:UniProtKB/TrEMBL;Acc:F4I2T5] | WAKL7 |
| AT1G16170.1 | AT1G16170.1 | Ephrin-A3 protein [Source:UniProtKB/TrEMBL;Acc:Q94K72] | |
| AT1G16420.1 | AT1G16420.1 | Metacaspase-8 [Source:UniProtKB/Swiss-Prot;Acc:Q9SA41] | AMC8 |
| AT1G16905.1 | AT1G16905.1 | Curculin-like (Mannose-binding) lectin family protein [Source:UniProtKB/TrEMBL;Acc:Q8GY81] | |
| AT1G18710.1 | AT1G18710.1 | MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9M9U2] | AtMYB47 |
| AT1G18773.1 | AT1G18773.1 | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; BEST Arabidopsis thaliana protein match is: carboxylesterases (TAIR:AT4G22300.1); Ha. [Source:TAIR;Acc:AT1G18773] | |
| AT1G18810.1 | AT1G18810.1 | Protein PHYTOCHROME KINASE SUBSTRATE 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8GXS8] | PKS3 |
| AT1G19050.1 | AT1G19050.1 | At1g19050 [Source:UniProtKB/TrEMBL;Acc:Q2HIJ6] | ARR7 |
| AT1G19610.1 | AT1G19610.1 | Defensin-like protein 19 [Source:UniProtKB/Swiss-Prot;Acc:P82787] | PDF1.4 |
| AT1G19960.1 | AT1G19960.1 | Putative uncharacterized protein At1g19960 [Source:UniProtKB/TrEMBL;Acc:Q9LNS5] | |
| AT1G20350.1 | AT1G20350.1 | Mitochondrial import inner membrane translocase subunit TIM17-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LN27] | TIM17-1 |
| AT1G20823.1 | AT1G20823.1 | RING-H2 finger protein ATL80 [Source:UniProtKB/Swiss-Prot;Acc:Q9LM69] | ATL80 |
| AT1G21050.1 | AT1G21050.1 | Protein of unknown function, DUF617 [Source:TAIR;Acc:AT1G21050] | |
| AT1G21120.1 | AT1G21120.1 | O-methyltransferase family protein [Source:TAIR;Acc:AT1G21120] | |
| AT1G22460.1 | AT1G22460.1 | O-fucosyltransferase 7 [Source:UniProtKB/Swiss-Prot;Acc:B7ZWR7] | OFUT7 |
| AT1G22650.1 | AT1G22650.1 | Probable alkaline/neutral invertase D [Source:UniProtKB/Swiss-Prot;Acc:F4I2X9] | INVD |
| AT1G24140.1 | AT1G24140.1 | Metalloendoproteinase 3-MMP [Source:UniProtKB/Swiss-Prot;Acc:Q5XF51] | 3MMP |
| AT1G24145.1 | AT1G24145.1 | At1g24145 [Source:UniProtKB/TrEMBL;Acc:Q8GYP2] | |
| AT1G24147.1 | AT1G24147.1 | Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q1G3U1] | |
| AT1G24280.1 | AT1G24280.1 | Glucose-6-phosphate 1-dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178WP00] | G6PD3 |
| AT1G24405.1 | AT1G24405.1 | F21J9.7 [Source:UniProtKB/TrEMBL;Acc:Q9FYM2] | |
| AT1G25422.1 | AT1G25422.1 | Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1G3T8] | |
| AT1G25550.1 | AT1G25550.1 | Transcription factor HHO3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPE8] | HHO3 |
| AT1G26770.1 | AT1G26770.1 | Expansin [Source:UniProtKB/TrEMBL;Acc:F4HPC1] | ATEXPA10 |
| AT1G27170.1 | AT1G27170.1 | Transmembrane receptors / ATP binding protein [Source:UniProtKB/TrEMBL;Acc:F4HR53] | |
| AT1G27740.1 | AT1G27740.1 | Transcription factor bHLH54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LEG1] | BHLH54 |
| AT1G29440.1 | AT1G29440.1 | Auxin-responsive protein SAUR63 [Source:UniProtKB/Swiss-Prot;Acc:F4I1H5] | SAUR63 |
| AT1G29640.1 | AT1G29640.1 | At1g29640 [Source:UniProtKB/TrEMBL;Acc:Q9C7N7] | |
| AT1G29910.1 | AT1G29910.1 | Chlorophyll a-b binding protein 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ87] | LHCB1.1 |
| AT1G30370.1 | AT1G30370.1 | DLAH [Source:UniProtKB/TrEMBL;Acc:A0A178W2K8] | |
| AT1G32380.1 | AT1G32380.1 | Ribose-phosphate pyrophosphokinase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42583] | PRS2 |
| AT1G32780.1 | AT1G32780.1 | Alcohol dehydrogenase-like 3 [Source:UniProtKB/Swiss-Prot;Acc:A1L4Y2] | |
| AT1G32910.1 | AT1G32910.1 | HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9MAP9] | |
| AT1G32920.1 | AT1G32920.1 | At1g32920/F9L11_25 [Source:UniProtKB/TrEMBL;Acc:Q93WI1] | |
| AT1G32928.1 | AT1G32928.1 | Avr9/Cf-9 rapidly elicited protein [Source:UniProtKB/TrEMBL;Acc:Q56XA0] | |
| AT1G32970.1 | AT1G32970.1 | Subtilisin-like protease SBT3.2 [Source:UniProtKB/Swiss-Prot;Acc:Q9MAP4] | SBT3.2 |
| AT1G34060.1 | AT1G34060.1 | Tryptophan aminotransferase-related protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q93Z38] | TAR4 |
| AT1G35230.1 | AT1G35230.1 | Classical arabinogalactan protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8LCE4] | AGP5 |
| AT1G35560.1 | AT1G35560.1 | Transcription factor TCP23 [Source:UniProtKB/Swiss-Prot;Acc:Q9LQF0] | TCP23 |
| AT1G37130.1 | AT1G37130.1 | Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035] | NIA2 |
| AT1G43710.1 | AT1G43710.1 | SDC1 [Source:UniProtKB/TrEMBL;Acc:A0A178WA97] | SDC |
| AT1G47395.1 | AT1G47395.1 | At1g47390 [Source:UniProtKB/TrEMBL;Acc:Q8GUL3] | |
| AT1G49000.1 | AT1G49000.1 | At1g49000 [Source:UniProtKB/TrEMBL;Acc:Q9M9A2] | |
| AT1G49200.1 | AT1G49200.1 | RING-H2 finger protein ATL75 [Source:UniProtKB/Swiss-Prot;Acc:Q94BY6] | ATL75 |
| AT1G49230.1 | AT1G49230.1 | RING-H2 finger protein ATL78 [Source:UniProtKB/Swiss-Prot;Acc:Q6NQG7] | ATL78 |
| AT1G49500.1 | AT1G49500.1 | At1g49500/F13F21_6 [Source:UniProtKB/TrEMBL;Acc:Q9XIB7] | |
| AT1G49860.1 | AT1G49860.1 | Glutathione S-transferase F14 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6C8] | GSTF14 |
| AT1G50110.1 | AT1G50110.1 | Branched-chain-amino-acid aminotransferase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPM9] | BCAT6 |
| AT1G50290.1 | AT1G50290.1 | At1g50290/F14I3_12 [Source:UniProtKB/TrEMBL;Acc:Q944R3] | |
| AT1G50750.1 | AT1G50750.1 | Plant mobile domain protein family [Source:TAIR;Acc:AT1G50750] | |
| AT1G52040.1 | AT1G52040.1 | Myrosinase-binding protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SAV0] | MBP1 |
| AT1G54120.1 | AT1G54120.1 | F15I1.22 [Source:UniProtKB/TrEMBL;Acc:Q9SYH0] | |
| AT1G54970.1 | AT1G54970.1 | Proline-rich protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FZ35] | PRP1 |
| AT1G55580.1 | AT1G55580.1 | SCL18 [Source:UniProtKB/TrEMBL;Acc:A0A178WEV4] | SCL18 |
| AT1G55920.1 | AT1G55920.1 | Serine acetyltransferase 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q42588] | SAT1 |
| AT1G56250.1 | AT1G56250.1 | F-box protein VBF [Source:UniProtKB/Swiss-Prot;Acc:Q9C7K0] | VBF |
| AT1G57630.1 | AT1G57630.1 | Disease resistance protein RPP1-WsB, putative [Source:UniProtKB/TrEMBL;Acc:Q9FVT9] | |
| AT1G59740.1 | AT1G59740.1 | Protein NRT1/ PTR FAMILY 4.3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VV5] | NPF4.3 |
| AT1G59940.1 | AT1G59940.1 | response regulator 3 [Source:TAIR;Acc:AT1G59940] | ARR3 |
| AT1G59970.1 | AT1G59970.1 | Metalloendoproteinase 5-MMP [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUJ5] | 5MMP |
| AT1G60050.1 | AT1G60050.1 | WAT1-related protein [Source:UniProtKB/TrEMBL;Acc:A0A178WGH0] | |
| AT1G61930.1 | AT1G61930.1 | At1g61930 [Source:UniProtKB/TrEMBL;Acc:O80698] | |
| AT1G62300.1 | AT1G62300.1 | Uncharacterized protein At1g62300 (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0SV11] | WRKY6 |
| AT1G62420.1 | AT1G62420.1 | DUF506 family protein (DUF506) [Source:UniProtKB/TrEMBL;Acc:O48807] | |
| AT1G62510.1 | AT1G62510.1 | Bifunctional inhibitor/lipid-transfer protein/seed storage 2S albumin superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SXE6] | |
| AT1G63270.1 | AT1G63270.1 | ABC transporter I family member 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8T1] | ABCI1 |
| AT1G63580.1 | AT1G63580.1 | Probable cysteine-rich repeat secretory protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SH42] | CRRSP6 |
| AT1G63930.1 | AT1G63930.1 | At1g63930 [Source:UniProtKB/TrEMBL;Acc:Q9CAK4] | ROH1 |
| AT1G63940.3 | AT1G63940.3 | MDAR6 [Source:UniProtKB/TrEMBL;Acc:A0A178WFH3] | MDAR5 |
| AT1G64190.1 | AT1G64190.1 | 6-phosphogluconate dehydrogenase, decarboxylating 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SH69] | PGD1 |
| AT1G64700.1 | AT1G64700.1 | At1g64700 [Source:UniProtKB/TrEMBL;Acc:Q9XIS1] | |
| AT1G65570.1 | AT1G65570.1 | F5I14.10 [Source:UniProtKB/TrEMBL;Acc:O04474] | |
| AT1G65870.1 | AT1G65870.1 | Dirigent protein 21 [Source:UniProtKB/Swiss-Prot;Acc:Q9SS03] | DIR21 |
| AT1G65900.1 | AT1G65900.1 | At1g65900/F12P19_7 [Source:UniProtKB/TrEMBL;Acc:Q94A98] | |
| AT1G66100.1 | AT1G66100.1 | Probable thionin-2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8D6] | |
| AT1G66140.1 | AT1G66140.1 | Zinc finger protein 4 [Source:UniProtKB/Swiss-Prot;Acc:Q39263] | ZFP4 |
| AT1G66390.1 | AT1G66390.1 | Transcription factor MYB90 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZTC3] | MYB90 |
| AT1G66440.1 | AT1G66440.1 | Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9C704] | |
| AT1G66600.1 | AT1G66600.1 | Probable WRKY transcription factor 63 [Source:UniProtKB/Swiss-Prot;Acc:Q9C6H5] | WRKY63 |
| AT1G67110.1 | AT1G67110.1 | Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW95] | CYP735A2 |
| AT1G67910.2 | AT1G67910.2 | AT1G67910 protein [Source:UniProtKB/TrEMBL;Acc:Q9C9V7] | |
| AT1G67920.1 | AT1G67920.1 | At1g67920 [Source:UniProtKB/TrEMBL;Acc:Q9C9V8] | |
| AT1G68238.1 | AT1G68238.1 | Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q1G3X3] | |
| AT1G68320.1 | AT1G68320.1 | Transcription factor MYB62 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9G7] | MYB62 |
| AT1G68500.1 | AT1G68500.1 | Uncharacterized protein At1g68500 [Source:UniProtKB/TrEMBL;Acc:Q84K42] | |
| AT1G68620.1 | AT1G68620.1 | Probable carboxylesterase 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SX25] | CXE6 |
| AT1G68670.1 | AT1G68670.1 | Transcription factor HHO2 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZS3] | HHO2 |
| AT1G68825.1 | AT1G68825.1 | DVL5 [Source:UniProtKB/TrEMBL;Acc:Q6X5T8] | DVL5 |
| AT1G69150.1 | AT1G69150.1 | Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4I0J7] | |
| AT1G69440.1 | AT1G69440.1 | Protein argonaute 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9C793] | AGO7 |
| AT1G69870.1 | AT1G69870.1 | Protein NRT1/ PTR FAMILY 2.13 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX77] | NPF2.13 |
| AT1G69930.1 | AT1G69930.1 | Glutathione S-transferase U11 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAS6] | GSTU11 |
| AT1G70260.1 | AT1G70260.1 | WAT1-related protein At1g70260 [Source:UniProtKB/Swiss-Prot;Acc:F4I5D5] | |
| AT1G71520.1 | AT1G71520.1 | Ethylene-responsive transcription factor ERF020 [Source:UniProtKB/Swiss-Prot;Acc:Q9C9I8] | ERF020 |
| AT1G72200.1 | AT1G72200.1 | RING-H2 finger protein ATL11 [Source:UniProtKB/Swiss-Prot;Acc:Q84W40] | ATL11 |
| AT1G72220.1 | AT1G72220.1 | RING-H2 finger protein ATL54 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFY8] | ATL54 |
| AT1G72300.1 | AT1G72300.1 | Leucine-rich repeat receptor-like protein kinase (Fragment) [Source:UniProtKB/TrEMBL;Acc:C0LGI8] | PSY1R |
| AT1G73000.1 | AT1G73000.1 | RCAR13 [Source:UniProtKB/TrEMBL;Acc:A0A178W862] | PYL3 |
| AT1G73220.1 | AT1G73220.1 | Organic cation/carnitine transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CAT6] | OCT1 |
| AT1G74650.1 | AT1G74650.1 | At1g74650 [Source:UniProtKB/TrEMBL;Acc:Q9CA52] | ATY13 |
| AT1G74660.1 | AT1G74660.1 | Mini zinc finger protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9CA51] | MIF1 |
| AT1G74750.1 | AT1G74750.1 | Pentatricopeptide repeat-containing protein At1g74750 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSF9] | |
| AT1G74810.1 | AT1G74810.1 | Putative boron transporter 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SSG5] | BOR5 |
| AT1G74930.1 | AT1G74930.1 | Ethylene-responsive transcription factor ERF018 [Source:UniProtKB/Swiss-Prot;Acc:Q9S7L5] | ERF018 |
| AT1G75140.1 | AT1G75140.1 | Uncharacterized membrane protein At1g75140 [Source:UniProtKB/Swiss-Prot;Acc:Q9FRK5] | |
| AT1G75490.1 | AT1G75490.1 | Dehydration-responsive element-binding protein 2D [Source:UniProtKB/Swiss-Prot;Acc:Q9LQZ2] | DREB2D |
| AT1G75580.1 | AT1G75580.1 | At1g75580 [Source:UniProtKB/TrEMBL;Acc:Q9LR00] | |
| AT1G75590.1 | AT1G75590.1 | SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:F4HZ54] | |
| AT1G76040.2 | AT1G76040.2 | calcium-dependent protein kinase 29 [Source:TAIR;Acc:AT1G76040] | CPK29 |
| AT1G76640.1 | AT1G76640.1 | Calcium-binding protein CML39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRE7] | CML39 |
| AT1G77400.1 | AT1G77400.1 | At1g77400 protein [Source:UniProtKB/TrEMBL;Acc:Q9FVW9] | |
| AT1G77760.1 | AT1G77760.1 | Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8] | NIA1 |
| AT1G78050.1 | AT1G78050.1 | Phosphoglycerate/bisphosphoglycerate mutase [Source:UniProtKB/TrEMBL;Acc:F4I8M8] | PGM |
| AT1G78090.1 | AT1G78090.1 | Trehalose-phosphate phosphatase B [Source:UniProtKB/Swiss-Prot;Acc:Q9C9S4] | TPPB |
| AT1G80310.1 | AT1G80310.1 | MOT2 [Source:UniProtKB/TrEMBL;Acc:A0A178WGR3] | MOT2 |
| AT1G80325.1 | AT1G80325.1 | other RNA [Source:TAIR;Acc:AT1G80325] | |
| AT1G80440.1 | AT1G80440.1 | F-box/kelch-repeat protein At1g80440 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8L2] | |
| AT1G80555.1 | AT1G80555.1 | Isocitrate/isopropylmalate dehydrogenase family protein [Source:TAIR;Acc:AT1G80555] | |
| AT2G02980.1 | AT2G02980.1 | Pentatricopeptide repeat-containing protein At2g02980, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8LK93] | PCMP-H26 |
| AT2G03505.1 | AT2G03505.1 | At2g03505 [Source:UniProtKB/TrEMBL;Acc:Q6NPI4] | |
| AT2G14820.1 | AT2G14820.1 | BTB/POZ domain-containing protein NPY2 [Source:UniProtKB/Swiss-Prot;Acc:O80970] | NPY2 |
| AT2G14920.1 | AT2G14920.1 | Cytosolic sulfotransferase 10 [Source:UniProtKB/Swiss-Prot;Acc:O82330] | SOT10 |
| AT2G15620.1 | AT2G15620.1 | Ferredoxin–nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161] | NIR1 |
| AT2G16060.1 | AT2G16060.1 | NSHB1 [Source:UniProtKB/TrEMBL;Acc:A0A384KL50] | AHB1 |
| AT2G16660.1 | AT2G16660.1 | At2g16660/T24I21.7 [Source:UniProtKB/TrEMBL;Acc:Q9SLF1] | |
| AT2G17060.1 | AT2G17060.1 | Disease resistance protein (TIR-NBS-LRR class) family [Source:UniProtKB/TrEMBL;Acc:F4IMF2] | |
| AT2G17820.1 | AT2G17820.1 | Histidine kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SXL4] | AHK1 |
| AT2G18620.1 | AT2G18620.1 | Geranylgeranyl pyrophosphate synthase 7, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9ZU77] | |
| AT2G18660.1 | AT2G18660.1 | EG45-like domain containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV52] | EGC2 |
| AT2G19190.1 | AT2G19190.1 | Senescence-induced receptor-like serine/threonine-protein kinase [Source:UniProtKB/Swiss-Prot;Acc:O64483] | SIRK |
| AT2G19590.1 | AT2G19590.1 | 1-aminocyclopropane-1-carboxylate oxidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZUN4] | ACO1 |
| AT2G20520.1 | AT2G20520.1 | Fasciclin-like arabinogalactan protein 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIL7] | FLA6 |
| AT2G20670.1 | AT2G20670.1 | Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9SIU5] | |
| AT2G21210.1 | AT2G21210.1 | SAUR-like auxin-responsive protein family [Source:TAIR;Acc:AT2G21210] | |
| AT2G21560.1 | AT2G21560.1 | Nucleolar-like protein [Source:UniProtKB/TrEMBL;Acc:Q9SIK3] | |
| AT2G21900.1 | AT2G21900.1 | At2g21900 [Source:UniProtKB/TrEMBL;Acc:Q1LYW5] | WRKY59 |
| AT2G22200.1 | AT2G22200.1 | Ethylene-responsive transcription factor ERF056 [Source:UniProtKB/Swiss-Prot;Acc:Q9SIE4] | ERF056 |
| AT2G22500.1 | AT2G22500.1 | Mitochondrial uncoupling protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJY5] | PUMP5 |
| AT2G23170.1 | AT2G23170.1 | Indole-3-acetic acid-amido synthetase GH3.3 [Source:UniProtKB/Swiss-Prot;Acc:O22190] | GH3.3 |
| AT2G24130.1 | AT2G24130.1 | Leucine-rich receptor-like protein kinase family protein [Source:TAIR;Acc:AT2G24130] | |
| AT2G25680.1 | AT2G25680.1 | Molybdate transporter 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SL95] | MOT1 |
| AT2G26380.1 | AT2G26380.1 | Leucine-rich repeat (LRR) family protein [Source:UniProtKB/TrEMBL;Acc:O48705] | |
| AT2G26695.1 | AT2G26695.1 | At2g26695 [Source:UniProtKB/TrEMBL;Acc:Q6ID73] | |
| AT2G26710.1 | AT2G26710.1 | CYP734A1 [Source:UniProtKB/TrEMBL;Acc:A0A178VRF1] | CYP734A1 |
| AT2G26820.1 | AT2G26820.1 | phloem protein 2-A3 [Source:TAIR;Acc:AT2G26820] | ATPP2-A3 |
| AT2G27510.1 | AT2G27510.1 | Ferredoxin [Source:UniProtKB/TrEMBL;Acc:A0A178VWS0] | FD3 |
| AT2G27830.1 | AT2G27830.1 | Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q9ZUY4] | |
| AT2G28690.1 | AT2G28690.1 | TOX high mobility group box protein, putative (DUF1635) [Source:UniProtKB/TrEMBL;Acc:Q8L8B6] | |
| AT2G28710.1 | AT2G28710.1 | At2g28710 [Source:UniProtKB/TrEMBL;Acc:Q9SI97] | |
| AT2G28780.1 | AT2G28780.1 | p-hydroxybenzoic acid efflux pump subunit [Source:UniProtKB/TrEMBL;Acc:Q84W96] | |
| AT2G28890.1 | AT2G28890.1 | Probable protein phosphatase 2C 23 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZV25] | PLL4 |
| AT2G29720.1 | AT2G29720.1 | FAD/NAD(P)-binding oxidoreductase family protein [Source:UniProtKB/TrEMBL;Acc:O82384] | CTF2B |
| AT2G29730.1 | AT2G29730.1 | Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8PVN2] | UGT71D1 |
| AT2G30040.1 | AT2G30040.1 | Mitogen-activated protein kinase kinase kinase 14 [Source:UniProtKB/TrEMBL;Acc:O64741] | MAPKKK14 |
| AT2G30100.1 | AT2G30100.1 | Pentatricopeptide repeat-containing protein At2g30100, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q0WNN7] | |
| AT2G30230.1 | AT2G30230.1 | 6,7-dimethyl-8-ribityllumazine synthase [Source:UniProtKB/TrEMBL;Acc:O22919] | |
| AT2G30590.1 | AT2G30590.1 | Probable WRKY transcription factor 21 [Source:UniProtKB/Swiss-Prot;Acc:O04336] | WRKY21 |
| AT2G30670.1 | AT2G30670.1 | Tropinone reductase homolog At2g30670 [Source:UniProtKB/Swiss-Prot;Acc:O49332] | |
| AT2G30766.1 | AT2G30766.1 | Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q56Y35] | |
| AT2G31940.1 | AT2G31940.1 | Oxidoreductase/transition metal ion-binding protein [Source:UniProtKB/TrEMBL;Acc:Q9SKA6] | |
| AT2G31945.1 | AT2G31945.1 | At2g31940/F20M17.2 [Source:UniProtKB/TrEMBL;Acc:Q8RU85] | |
| AT2G32530.1 | AT2G32530.1 | Cellulose synthase-like protein B3 [Source:UniProtKB/Swiss-Prot;Acc:Q8RX83] | CSLB3 |
| AT2G32610.1 | AT2G32610.1 | Cellulose synthase-like protein B1 [Source:UniProtKB/Swiss-Prot;Acc:O80898] | CSLB1 |
| AT2G32680.1 | AT2G32680.1 | Receptor like protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O48849] | AtRLP23 |
| AT2G32870.1 | AT2G32870.1 | TRAF-like family protein [Source:UniProtKB/TrEMBL;Acc:F4IUR7] | |
| AT2G32960.1 | AT2G32960.1 | Tyrosine-protein phosphatase DSP2 [Source:UniProtKB/Swiss-Prot;Acc:Q84MD6] | DSP2 |
| AT2G33550.1 | AT2G33550.1 | Trihelix transcription factor ASR3 [Source:UniProtKB/Swiss-Prot;Acc:Q8VZ20] | ASR3 |
| AT2G33700.1 | AT2G33700.1 | Probable protein phosphatase 2C 27 [Source:UniProtKB/Swiss-Prot;Acc:P93006] | PP2C27 |
| AT2G34010.1 | AT2G34010.1 | Protein SPEAR2 [Source:UniProtKB/Swiss-Prot;Acc:F4IGU3] | SPEAR2 |
| AT2G34355.1 | AT2G34355.1 | At2g34355 [Source:UniProtKB/TrEMBL;Acc:Q501E0] | |
| AT2G34430.1 | AT2G34430.1 | Chlorophyll a-b binding protein, chloroplastic [Source:UniProtKB/TrEMBL;Acc:Q39142] | LHB1B1 |
| AT2G34610.1 | AT2G34610.1 | Cotton fiber protein [Source:UniProtKB/TrEMBL;Acc:Q8VYN4] | |
| AT2G35270.1 | AT2G35270.1 | AT-hook motif nuclear-localized protein 21 [Source:UniProtKB/Swiss-Prot;Acc:O82166] | AHL21 |
| AT2G35637.1 | AT2G35637.1 | other RNA [Source:TAIR;Acc:AT2G35637] | |
| AT2G35820.1 | AT2G35820.1 | ureidoglycolate hydrolases [Source:TAIR;Acc:AT2G35820] | |
| AT2G36050.1 | AT2G36050.1 | OFP15 [Source:UniProtKB/TrEMBL;Acc:A0A178VSX7] | OFP15 |
| AT2G36470.1 | AT2G36470.1 | DUF868 family protein, putative (DUF868) [Source:UniProtKB/TrEMBL;Acc:Q9SJQ8] | |
| AT2G36540.1 | AT2G36540.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SJQ4] | |
| AT2G36580.1 | AT2G36580.1 | Pyruvate kinase [Source:UniProtKB/TrEMBL;Acc:A0A178VX82] | |
| AT2G36770.1 | AT2G36770.1 | Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8QNU5] | UGT73C4 |
| AT2G36970.1 | AT2G36970.1 | Glycosyltransferase (Fragment) [Source:UniProtKB/TrEMBL;Acc:W8Q6X6] | UGT86A1 |
| AT2G37440.1 | AT2G37440.1 | Type I inositol polyphosphate 5-phosphatase 8 [Source:UniProtKB/Swiss-Prot;Acc:Q0WT19] | IP5P8 |
| AT2G37900.1 | AT2G37900.1 | Protein NRT1/ PTR FAMILY 5.6 [Source:UniProtKB/Swiss-Prot;Acc:P0CI03] | NPF5.6 |
| AT2G38170.3 | AT2G38170.3 | Vacuolar cation/proton exchanger [Source:UniProtKB/TrEMBL;Acc:B9DFT4] | CAX1 |
| AT2G38320.1 | AT2G38320.1 | Protein trichome birefringence-like 34 [Source:UniProtKB/Swiss-Prot;Acc:O80919] | TBL34 |
| AT2G38510.1 | AT2G38510.1 | Protein DETOXIFICATION 53 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVH5] | DTX53 |
| AT2G38600.1 | AT2G38600.1 | HAD superfamily, subfamily IIIB acid phosphatase [Source:UniProtKB/TrEMBL;Acc:Q9ZVI2] | |
| AT2G38640.1 | AT2G38640.1 | Protein LURP-one-related 8 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZVI6] | |
| AT2G39250.1 | AT2G39250.1 | AP2-like ethylene-responsive transcription factor SNZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV67] | SNZ |
| AT2G39330.1 | AT2G39330.1 | jacalin-related lectin 23 [Source:TAIR;Acc:AT2G39330] | JAL23 |
| AT2G39370.1 | AT2G39370.1 | Probable membrane-associated kinase regulator 4 [Source:UniProtKB/Swiss-Prot;Acc:O80624] | MAKR4 |
| AT2G39710.1 | AT2G39710.1 | Eukaryotic aspartyl protease family protein [Source:UniProtKB/TrEMBL;Acc:O22282] | |
| AT2G40230.1 | AT2G40230.1 | HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9XEF2] | |
| AT2G40750.1 | AT2G40750.1 | Probable WRKY transcription factor 54 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU8] | WRKY54 |
| AT2G41440.1 | AT2G41440.1 | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G41470.1); Ha. [Source:TAIR;Acc:AT2G41440] | |
| AT2G41480.1 | AT2G41480.1 | Peroxidase 25 [Source:UniProtKB/Swiss-Prot;Acc:O80822] | PER25 |
| AT2G42140.1 | AT2G42140.1 | VQ motif-containing protein 17 [Source:UniProtKB/Swiss-Prot;Acc:O48522] | VQ17 |
| AT2G42350.1 | AT2G42350.1 | RING-H2 finger protein ATL40 [Source:UniProtKB/Swiss-Prot;Acc:Q9SLC4] | ATL40 |
| AT2G42600.1 | AT2G42600.1 | PPC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VV64] | PPC2 |
| AT2G42870.1 | AT2G42870.1 | Transcription factor PAR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJH0] | PAR1 |
| AT2G43760.1 | AT2G43760.1 | Molybdopterin synthase catalytic subunit [Source:UniProtKB/TrEMBL;Acc:A0A178VNE3] | MOCS2 |
| AT2G44578.1 | AT2G44578.1 | RING/U-box superfamily protein [Source:UniProtKB/TrEMBL;Acc:A8MS73] | |
| AT2G44940.1 | AT2G44940.1 | Ethylene-responsive transcription factor ERF034 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBQ7] | ERF034 |
| AT2G45570.1 | AT2G45570.1 | Cytochrome P450 76C2 [Source:UniProtKB/Swiss-Prot;Acc:O64637] | CYP76C2 |
| AT2G46495.1 | AT2G46495.1 | Putative RING-H2 finger protein ATL21A [Source:UniProtKB/Swiss-Prot;Acc:P0CH01] | ATL21A |
| AT2G46620.1 | AT2G46620.1 | AAA-ATPase At2g46620 [Source:UniProtKB/Swiss-Prot;Acc:F4IJ77] | |
| AT2G47880.1 | AT2G47880.1 | Glutaredoxin-C13 [Source:UniProtKB/Swiss-Prot;Acc:O82255] | GRXC13 |
| AT2G48080.1 | AT2G48080.1 | Oxidoreductase, 2OG-Fe(II) oxygenase family protein [Source:UniProtKB/TrEMBL;Acc:F4IN63] | |
| AT3G01080.1 | AT3G01080.1 | WRKY DNA-binding protein 58 [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLS8] | WRKY58 |
| AT3G02380.1 | AT3G02380.1 | Zinc finger protein CONSTANS-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q96502] | COL2 |
| AT3G02850.1 | AT3G02850.1 | SKOR [Source:UniProtKB/TrEMBL;Acc:A0A178VHK5] | SKOR |
| AT3G02910.1 | AT3G02910.1 | Putative gamma-glutamylcyclotransferase At3g02910 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T3] | |
| AT3G02980.1 | AT3G02980.1 | Histone acetyltransferase MCC1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M8T9] | MCC1 |
| AT3G03910.1 | AT3G03910.1 | Glutamate dehydrogenase [Source:UniProtKB/TrEMBL;Acc:A0A178VBI2] | GSH3 |
| AT3G04530.1 | AT3G04530.1 | Phosphoenolpyruvate carboxylase kinase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q93VK0] | PPCK2 |
| AT3G05327.1 | AT3G05327.1 | Cyclin [Source:UniProtKB/TrEMBL;Acc:Q1G3M7] | |
| NA | NA | NA | NA |
| AT3G05790.1 | AT3G05790.1 | Lon protease homolog 4, chloroplastic/mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L7] | LON4 |
| AT3G05800.1 | AT3G05800.1 | Transcription factor bHLH150 [Source:UniProtKB/Swiss-Prot;Acc:Q9M9L6] | BHLH150 |
| AT3G06370.1 | AT3G06370.1 | NHX4 [Source:UniProtKB/TrEMBL;Acc:A0A384KPV5] | NHX4 |
| AT3G06460.1 | AT3G06460.1 | F24P17.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SQU9] | |
| AT3G06490.1 | AT3G06490.1 | Transcription factor MYB108 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDE1] | MYB108 |
| AT3G06590.1 | AT3G06590.1 | Transcription factor bHLH148 [Source:UniProtKB/Swiss-Prot;Acc:Q9C8Z9] | BHLH148 |
| AT3G07070.1 | AT3G07070.1 | Probable serine/threonine-protein kinase PBL26 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFT7] | PBL26 |
| AT3G07195.1 | AT3G07195.1 | RPM1-interacting protein 4 (RIN4) family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LSZ8] | |
| AT3G07270.1 | AT3G07270.1 | GTP cyclohydrolase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SFV7] | GCH1 |
| AT3G07340.1 | AT3G07340.1 | Transcription factor bHLH62 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRT2] | BHLH62 |
| AT3G07350.1 | AT3G07350.1 | F21O3.6 protein [Source:UniProtKB/TrEMBL;Acc:Q9SRT1] | |
| AT3G10120.1 | AT3G10120.1 | At3g10120 [Source:UniProtKB/TrEMBL;Acc:Q8GY70] | |
| AT3G11410.1 | AT3G11410.1 | Protein phosphatase 2C 37 [Source:UniProtKB/Swiss-Prot;Acc:P49598] | PP2CA |
| AT3G11580.1 | AT3G11580.1 | AP2/B3-like transcriptional factor family protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LT60] | |
| AT3G13730.1 | AT3G13730.1 | CYP90D1 [Source:UniProtKB/TrEMBL;Acc:A0A178VDZ8] | CYP90D1 |
| AT3G14210.1 | AT3G14210.1 | GDSL esterase/lipase ESM1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LJG3] | ESM1 |
| AT3G14260.1 | AT3G14260.1 | Protein LURP-one-related 11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUM1] | |
| AT3G16150.1 | AT3G16150.1 | ASPGB1 [Source:UniProtKB/TrEMBL;Acc:A0A384KV24] | |
| AT3G16210.1 | AT3G16210.1 | Putative F-box protein At3g16210 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU24] | |
| AT3G16560.1 | AT3G16560.1 | Protein phosphatase 2C family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VFN3] | |
| AT3G17510.1 | AT3G17510.1 | CBL-interacting serine/threonine-protein kinase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8RWC9] | CIPK1 |
| AT3G17520.1 | AT3G17520.1 | Late embryogenesis abundant protein (LEA) family protein [Source:UniProtKB/TrEMBL;Acc:F4J573] | |
| AT3G18560.1 | AT3G18560.1 | AT3g18560/K24M9_5 [Source:UniProtKB/TrEMBL;Acc:Q9LII3] | |
| AT3G18773.1 | AT3G18773.1 | RING-H2 finger protein ATL77 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS99] | ATL77 |
| AT3G18830.1 | AT3G18830.1 | PMT5 [Source:UniProtKB/TrEMBL;Acc:A0A178V5Y2] | PLT5 |
| AT3G19030.1 | AT3G19030.1 | AT3g19030/K13E13_15 [Source:UniProtKB/TrEMBL;Acc:Q9LJ63] | |
| AT3G19850.1 | AT3G19850.1 | BTB/POZ domain-containing protein At3g19850 [Source:UniProtKB/Swiss-Prot;Acc:Q9LT24] | |
| AT3G20160.1 | AT3G20160.1 | Geranylgeranyl pyrophosphate synthase 10, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q9LJY2] | |
| AT3G21351.1 | AT3G21351.1 | Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:F4IXJ9] | |
| AT3G21890.1 | AT3G21890.1 | BBX31 [Source:UniProtKB/TrEMBL;Acc:A0A178VEW7] | MIP1B |
| AT3G22550.1 | AT3G22550.1 | FCS-Like Zinc finger 8 [Source:UniProtKB/Swiss-Prot;Acc:Q8L471] | FLZ8 |
| AT3G22942.1 | AT3G22942.1 | AtGG2 [Source:UniProtKB/TrEMBL;Acc:A0A178V974] | GG2 |
| AT3G23030.1 | AT3G23030.1 | Auxin-responsive protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LQ54] | IAA2 |
| AT3G23120.1 | AT3G23120.1 | Receptor-like protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS79] | AtRLP38 |
| AT3G23210.1 | AT3G23210.1 | Transcription factor bHLH34 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTC7] | BHLH34 |
| AT3G23550.1 | AT3G23550.1 | Protein DETOXIFICATION 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9LUH3] | DTX18 |
| AT3G23880.1 | AT3G23880.1 | F-box/kelch-repeat protein At3g23880 [Source:UniProtKB/Swiss-Prot;Acc:Q9LIR8] | |
| AT3G24290.1 | AT3G24290.1 | Putative ammonium transporter 1 member 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LK16] | AMT1-5 |
| AT3G24510.1 | AT3G24510.1 | Defensin-like protein 259 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV55] | |
| AT3G24520.1 | AT3G24520.1 | Heat stress transcription factor C-1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV52] | HSFC1 |
| AT3G25190.1 | AT3G25190.1 | Vacuolar iron transporter homolog 2.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LSF6] | |
| AT3G25770.1 | AT3G25770.1 | AOC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VKE4] | AOC2 |
| AT3G25790.1 | AT3G25790.1 | Transcription factor HHO1 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS00] | HHO1 |
| AT3G26090.1 | AT3G26090.1 | Regulator of G-protein signaling 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8H1F2] | RGS1 |
| AT3G27170.1 | AT3G27170.1 | CLC-B [Source:UniProtKB/TrEMBL;Acc:A0A178VKG6] | CLC-B |
| AT3G28220.1 | AT3G28220.1 | AT3g28220/T19D11_3 [Source:UniProtKB/TrEMBL;Acc:Q9LHA6] | |
| AT3G28510.1 | AT3G28510.1 | AAA-ATPase At3g28510 [Source:UniProtKB/Swiss-Prot;Acc:Q9LH84] | |
| AT3G28690.1 | AT3G28690.1 | Protein kinase superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4J0D2] | |
| AT3G28740.1 | AT3G28740.1 | Cytochrome P450 81D11 [Source:UniProtKB/Swiss-Prot;Acc:Q9LHA1] | CYP81D11 |
| AT3G28910.1 | AT3G28910.1 | Transcription factor MYB30 [Source:UniProtKB/Swiss-Prot;Acc:Q9SCU7] | MYB30 |
| AT3G29034.1 | AT3G29034.1 | At3g29034 [Source:UniProtKB/TrEMBL;Acc:Q8GX70] | |
| AT3G29760.1 | AT3G29760.1 | Haloacid dehalogenase-like hydrolase (HAD) superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LRQ0] | |
| AT3G43850.1 | AT3G43850.1 | Uncharacterized protein T28A8_140 [Source:UniProtKB/TrEMBL;Acc:Q9LZG3] | |
| AT3G44800.1 | AT3G44800.1 | MATH domain and coiled-coil domain-containing protein At3g44800 [Source:UniProtKB/Swiss-Prot;Acc:F4J4A1] | |
| AT3G44820.1 | AT3G44820.1 | BTB/POZ domain-containing protein At3g44820 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYC8] | |
| AT3G45840.1 | AT3G45840.1 | Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:F4J6S4] | |
| AT3G46230.1 | AT3G46230.1 | 17.4 kDa class I heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:P19036] | HSP17.4A |
| AT3G46720.1 | AT3G46720.1 | UDP-glycosyltransferase 76E5 [Source:UniProtKB/Swiss-Prot;Acc:Q9STE6] | UGT76E5 |
| AT3G47090.1 | AT3G47090.1 | Leucine-rich repeat protein kinase family protein [Source:UniProtKB/TrEMBL;Acc:Q9SD64] | |
| AT3G47480.1 | AT3G47480.1 | Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89] | CML47 |
| AT3G47500.1 | AT3G47500.1 | Cyclic dof factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q8LFV3] | CDF3 |
| AT3G47520.1 | AT3G47520.1 | Malate dehydrogenase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SN86] | MDH |
| AT3G47980.1 | AT3G47980.1 | At3g47980 [Source:UniProtKB/TrEMBL;Acc:Q84MC3] | |
| AT3G48360.1 | AT3G48360.1 | BTB/POZ and TAZ domain-containing protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q94BN0] | BT2 |
| AT3G48920.1 | AT3G48920.1 | MYB transcription factor [Source:UniProtKB/TrEMBL;Acc:Q9SMT1] | AtMYB45 |
| AT3G49190.1 | AT3G49190.1 | O-acyltransferase (WSD1-like) family protein [Source:UniProtKB/TrEMBL;Acc:Q9M3B3] | |
| AT3G49690.1 | AT3G49690.1 | RAX3 [Source:UniProtKB/TrEMBL;Acc:A0A178VK29] | RAX3 |
| AT3G49760.1 | AT3G49760.1 | At3g49760 [Source:UniProtKB/TrEMBL;Acc:Q29PT3] | AtbZIP5 |
| AT3G49940.1 | AT3G49940.1 | LOB domain-containing protein 38 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN23] | LBD38 |
| AT3G49970.1 | AT3G49970.1 | Putative BTB/POZ domain-containing protein At3g49970 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN21] | |
| AT3G49980.1 | AT3G49980.1 | F-box and associated interaction domains-containing protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LP00] | |
| AT3G50750.1 | AT3G50750.1 | BEH1 [Source:UniProtKB/TrEMBL;Acc:A0A178VA20] | BEH1 |
| AT3G50800.1 | AT3G50800.1 | Uncharacterized protein At3g50800 [Source:UniProtKB/TrEMBL;Acc:Q9SVL8] | |
| AT3G50870.1 | AT3G50870.1 | GATA transcription factor 18 [Source:UniProtKB/Swiss-Prot;Acc:Q8LC79] | GATA18 |
| AT3G50900.1 | AT3G50900.1 | At3g50900 [Source:UniProtKB/TrEMBL;Acc:Q9SVK9] | |
| AT3G50910.1 | AT3G50910.1 | AT3g50910/F18B3_190 [Source:UniProtKB/TrEMBL;Acc:Q94BX2] | |
| AT3G52360.1 | AT3G52360.1 | Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q9FT46] | |
| AT3G53150.1 | AT3G53150.1 | UDP-glucosyl transferase 73D1 [Source:TAIR;Acc:AT3G53150] | UGT73D1 |
| AT3G54830.1 | AT3G54830.1 | ||
| AT3G54990.1 | AT3G54990.1 | AP2-like ethylene-responsive transcription factor SMZ [Source:UniProtKB/Swiss-Prot;Acc:Q6PV68] | SMZ |
| AT3G56400.1 | AT3G56400.1 | Probable WRKY transcription factor 70 [Source:UniProtKB/Swiss-Prot;Acc:Q9LY00] | WRKY70 |
| AT3G57157.1 | AT3G57157.1 | other RNA [Source:TAIR;Acc:AT3G57157] | |
| AT3G57920.1 | AT3G57920.1 | Squamosa promoter-binding-like protein 15 [Source:UniProtKB/Swiss-Prot;Acc:Q9M2Q6] | SPL15 |
| AT3G59340.1 | AT3G59340.1 | Solute carrier family 35 protein (DUF914) [Source:UniProtKB/TrEMBL;Acc:A0A1I9LLD6] | |
| AT3G59880.1 | AT3G59880.1 | Expressed protein [Source:UniProtKB/TrEMBL;Acc:Q5BPM7] | |
| AT3G59940.1 | AT3G59940.1 | F-box/kelch-repeat protein SKIP20 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1Y1] | SKIP20 |
| AT3G60120.1 | AT3G60120.1 | Beta-glucosidase 27 [Source:UniProtKB/Swiss-Prot;Acc:Q9M1D1] | BGLU27 |
| AT3G61460.1 | AT3G61460.1 | BRH1 RING finger protein [Source:UniProtKB/TrEMBL;Acc:Q9XF92] | BRH1 |
| AT3G61890.1 | AT3G61890.1 | HB-12 [Source:UniProtKB/TrEMBL;Acc:A0A178VND2] | ATHB-12 |
| AT3G62550.1 | AT3G62550.1 | Adenine nucleotide alpha hydrolases-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q93W91] | |
| AT3G62930.1 | AT3G62930.1 | Monothiol glutaredoxin-S6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC8] | GRXS6 |
| AT3G62960.1 | AT3G62960.1 | Glutaredoxin-C14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LYC5] | GRXC14 |
| AT3G63110.1 | AT3G63110.1 | IPT3 [Source:UniProtKB/TrEMBL;Acc:A0A178V8J2] | IPT3 |
| AT4G00416.1 | AT4G00416.1 | Methyl-CpG-binding domain-containing protein 3 [Source:UniProtKB/Swiss-Prot;Acc:Q4PSK1] | MBD3 |
| AT4G00940.1 | AT4G00940.1 | Dof zinc finger protein DOF4.1 [Source:UniProtKB/Swiss-Prot;Acc:Q9M161] | DOF4.1 |
| AT4G01360.1 | AT4G01360.1 | BPS1-like protein [Source:UniProtKB/TrEMBL;Acc:F4JI15] | |
| AT4G01630.1 | AT4G01630.1 | Expansin [Source:UniProtKB/TrEMBL;Acc:A0A178UWZ2] | EXPA17 |
| AT4G01840.1 | AT4G01840.1 | Two-pore potassium channel 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9S6Z8] | TPK5 |
| AT4G02380.1 | AT4G02380.1 | senescence-associated gene 21 [Source:TAIR;Acc:AT4G02380] | SAG21 |
| AT4G03400.1 | AT4G03400.1 | Indole-3-acetic acid-amido synthetase GH3.10 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZNS2] | DFL2 |
| AT4G04330.1 | AT4G04330.1 | Chaperonin-like RBCX protein 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AU9] | RBCX1 |
| AT4G04490.1 | AT4G04490.1 | Cysteine-rich receptor-like protein kinase 36 [Source:UniProtKB/Swiss-Prot;Acc:Q9XEC6] | CRK36 |
| AT4G04540.1 | AT4G04540.1 | Putative cysteine-rich receptor-like protein kinase 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SYS7] | CRK39 |
| AT4G04745.1 | AT4G04745.1 | At4g04745 [Source:UniProtKB/TrEMBL;Acc:Q6NL28] | |
| AT4G05070.1 | AT4G05070.1 | AT4g05070 protein [Source:UniProtKB/TrEMBL;Acc:Q9S9T1] | |
| AT4G05390.1 | AT4G05390.1 | Ferredoxin–NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6] | RFNR1 |
| AT4G05390.2 | AT4G05390.2 | Ferredoxin–NADP reductase, root isozyme 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9M0V6] | RFNR1 |
| AT4G09000.2 | AT4G09000.2 | General regulatory factor 1 [Source:UniProtKB/TrEMBL;Acc:F4JJ94] | GRF1 |
| AT4G09620.1 | AT4G09620.1 | Mitochondrial transcription termination factor family protein [Source:UniProtKB/TrEMBL;Acc:F4JK28] | |
| AT4G11050.1 | AT4G11050.1 | Endoglucanase 19 [Source:UniProtKB/Swiss-Prot;Acc:Q8L7I0] | AtGH9C3 |
| AT4G11460.1 | AT4G11460.1 | Putative cysteine-rich receptor-like protein kinase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q9LDT0] | CRK30 |
| AT4G13300.1 | AT4G13300.1 | (Z)-gamma-bisabolene synthase 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K1] | TPS13 |
| AT4G13310.1 | AT4G13310.1 | Cytochrome P450 71A20 [Source:UniProtKB/Swiss-Prot;Acc:Q9T0K2] | CYP71A20 |
| AT4G13390.1 | AT4G13390.1 | Extensin-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T0L0] | |
| NA.1 | NA | NA | NA |
| AT4G13620.1 | AT4G13620.1 | Ethylene-responsive transcription factor ERF062 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVQ0] | ERF062 |
| AT4G13890.1 | AT4G13890.1 | Serine hydroxymethyltransferase 5 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVM4] | SHM5 |
| AT4G14365.1 | AT4G14365.1 | Putative E3 ubiquitin-protein ligase XBAT34 [Source:UniProtKB/Swiss-Prot;Acc:Q9FPH0] | XBAT34 |
| AT4G14480.1 | AT4G14480.1 | Serine/threonine-protein kinase BLUS1 [Source:UniProtKB/Swiss-Prot;Acc:O23304] | BLUS1 |
| AT4G15680.1 | AT4G15680.1 | Monothiol glutaredoxin-S4 [Source:UniProtKB/Swiss-Prot;Acc:O23419] | GRXS4 |
| AT4G15700.1 | AT4G15700.1 | Monothiol glutaredoxin-S3 [Source:UniProtKB/Swiss-Prot;Acc:O23421] | GRXS3 |
| AT4G15740.1 | AT4G15740.1 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:O23425] | |
| AT4G17550.1 | AT4G17550.1 | Putative glycerol-3-phosphate transporter 4 [Source:UniProtKB/Swiss-Prot;Acc:O23596] | |
| AT4G17800.1 | AT4G17800.1 | AT-hook motif nuclear-localized protein 23 [Source:UniProtKB/Swiss-Prot;Acc:O23620] | AHL23 |
| AT4G18340.1 | AT4G18340.1 | Beta-1,3-glucanase-like protein [Source:UniProtKB/TrEMBL;Acc:Q8L837] | |
| AT4G19690.2 | AT4G19690.2 | Fe(2+) transport protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q38856] | IRT1 |
| AT4G21120.1 | AT4G21120.1 | CAT1 [Source:UniProtKB/TrEMBL;Acc:A0A178UYU0] | CAT1 |
| AT4G23220.1 | AT4G23220.1 | Cysteine-rich receptor-like protein kinase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H199] | CRK14 |
| AT4G23230.1 | AT4G23230.1 | Cysteine-rich receptor-like protein kinase 15 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4G6] | CRK15 |
| AT4G25140.1 | AT4G25140.1 | Oleosin [Source:UniProtKB/TrEMBL;Acc:A0A178V1V3] | OLEO1 |
| AT4G25470.1 | AT4G25470.1 | C-repeat binding factor 2 [Source:UniProtKB/TrEMBL;Acc:B2BIW9] | DREB1C |
| AT4G25490.1 | AT4G25490.1 | DRE/CRT-binding factor 1 [Source:UniProtKB/TrEMBL;Acc:B6DTR3] | DREB1B |
| AT4G25835.1 | AT4G25835.1 | AAA-ATPase At4g25835 [Source:UniProtKB/Swiss-Prot;Acc:Q8RY66] | |
| AT4G26200.1 | AT4G26200.1 | 1-aminocyclopropane-1-carboxylate synthase 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9STR4] | ACS7 |
| AT4G27310.1 | AT4G27310.1 | BBX28 [Source:UniProtKB/TrEMBL;Acc:A0A178V4D3] | |
| AT4G27950.1 | AT4G27950.1 | Ethylene-responsive transcription factor CRF4 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUE3] | CRF4 |
| AT4G28110.1 | AT4G28110.1 | MYB41 [Source:UniProtKB/TrEMBL;Acc:A0A178V452] | AtMYB41 |
| AT4G30110.1 | AT4G30110.1 | Cadmium/zinc-transporting ATPase HMA2 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZW4] | HMA2 |
| AT4G30230.1 | AT4G30230.1 | Uncharacterized protein AT4g30230 [Source:UniProtKB/TrEMBL;Acc:Q9SUM1] | |
| AT4G30350.1 | AT4G30350.1 | Protein SMAX1-LIKE 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9M0C5] | SMXL2 |
| AT4G30450.1 | AT4G30450.1 | At4g30450 [Source:UniProtKB/TrEMBL;Acc:Q9M0B5] | |
| AT4G30460.1 | AT4G30460.1 | Glycine-rich protein [Source:UniProtKB/TrEMBL;Acc:Q9M0B4] | |
| AT4G31330.1 | AT4G31330.1 | Uncharacterized protein At4g31330 [Source:UniProtKB/TrEMBL;Acc:Q9C5C1] | |
| AT4G31730.1 | AT4G31730.1 | Protein GLUTAMINE DUMPER 1 [Source:UniProtKB/Swiss-Prot;Acc:O81775] | GDU1 |
| AT4G31910.1 | AT4G31910.1 | Brassinosteroid-related acyltransferase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZ58] | BAT1 |
| AT4G32950.1 | AT4G32950.1 | Probable protein phosphatase 2C 61 [Source:UniProtKB/Swiss-Prot;Acc:O82637] | |
| AT4G33905.1 | AT4G33905.1 | AT4g33900 [Source:UniProtKB/TrEMBL;Acc:Q9FPH4] | |
| AT4G33960.1 | AT4G33960.1 | At4g33960 [Source:UniProtKB/TrEMBL;Acc:O81764] | |
| AT4G34135.1 | AT4G34135.1 | UDP-glucosyl transferase 73B2 [Source:UniProtKB/Swiss-Prot;Acc:Q94C57] | UGT73B2 |
| AT4G34380.1 | AT4G34380.1 | At4g34380 [Source:UniProtKB/TrEMBL;Acc:Q9SZ03] | |
| AT4G34419.1 | AT4G34419.1 | Uncharacterized protein At4g34420 [Source:UniProtKB/TrEMBL;Acc:Q67YQ7] | |
| AT4G34560.1 | AT4G34560.1 | Transmembrane protein [Source:UniProtKB/TrEMBL;Acc:Q8L623] | |
| AT4G34740.1 | AT4G34740.1 | Amidophosphoribosyltransferase [Source:UniProtKB/TrEMBL;Acc:A0A178UYQ3] | ASE2 |
| AT4G34760.1 | AT4G34760.1 | Auxin-responsive protein SAUR50 [Source:UniProtKB/Swiss-Prot;Acc:O65695] | SAUR50 |
| AT4G34770.1 | AT4G34770.1 | SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9SW57] | |
| AT4G34790.1 | AT4G34790.1 | At4g34790 [Source:UniProtKB/TrEMBL;Acc:Q9SW55] | |
| AT4G34800.1 | AT4G34800.1 | SAUR-like auxin-responsive protein family [Source:UniProtKB/TrEMBL;Acc:Q9SW54] | |
| AT4G34810.1 | AT4G34810.1 | SAUR-like auxin-responsive protein family [Source:TAIR;Acc:AT4G34810] | |
| AT4G34860.1 | AT4G34860.1 | A/N-InvB [Source:UniProtKB/TrEMBL;Acc:A0A178V2X0] | INVB |
| AT4G34950.1 | AT4G34950.1 | Major facilitator superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9SW40] | |
| AT4G35180.1 | AT4G35180.1 | Lysine histidine transporter-like 7 [Source:UniProtKB/Swiss-Prot;Acc:Q84WE9] | LHT7 |
| AT4G35390.1 | AT4G35390.1 | AT-hook motif nuclear-localized protein 25 [Source:UniProtKB/Swiss-Prot;Acc:Q6DBQ1] | AHL25 |
| AT4G36430.1 | AT4G36430.1 | Peroxidase 49 [Source:UniProtKB/Swiss-Prot;Acc:O23237] | PER49 |
| AT4G36670.1 | AT4G36670.1 | At4g36670 [Source:UniProtKB/TrEMBL;Acc:A4VCM1] | PLT6 |
| AT4G36740.1 | AT4G36740.1 | homeobox protein 40 [Source:TAIR;Acc:AT4G36740] | HB-5 |
| AT4G36850.1 | AT4G36850.1 | PQ-loop repeat family protein / transmembrane family protein [Source:UniProtKB/TrEMBL;Acc:Q94AH7] | |
| AT4G36880.1 | AT4G36880.1 | CP1 [Source:UniProtKB/TrEMBL;Acc:A0A178UST0] | CP1 |
| AT4G36950.1 | AT4G36950.1 | Mitogen-activated protein kinase kinase kinase 21 [Source:UniProtKB/TrEMBL;Acc:Q6K1M3] | MAPKKK21 |
| AT4G37240.1 | AT4G37240.1 | HTH-type transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q8LE56] | |
| AT4G37540.1 | AT4G37540.1 | LOB domain-containing protein 39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SZE8] | LBD39 |
| AT4G37610.1 | AT4G37610.1 | BTB/POZ and TAZ domain-containing protein 5 [Source:UniProtKB/Swiss-Prot;Acc:Q6EJ98] | BT5 |
| NA.2 | NA | NA | NA |
| AT4G38340.1 | AT4G38340.1 | Protein NLP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVF1] | NLP3 |
| AT4G39190.1 | AT4G39190.1 | Nucleolar-like protein [Source:UniProtKB/TrEMBL;Acc:Q9T028] | |
| AT4G39410.1 | AT4G39410.1 | Probable WRKY transcription factor 13 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVB7] | WRKY13 |
| AT4G39780.1 | AT4G39780.1 | Ethylene-responsive transcription factor ERF060 [Source:UniProtKB/Swiss-Prot;Acc:O65665] | ERF060 |
| AT4G40070.1 | AT4G40070.1 | RING-H2 finger protein ATL32 [Source:UniProtKB/Swiss-Prot;Acc:Q8W571] | ATL32 |
| AT5G01280.1 | AT5G01280.1 | BEST Arabidopsis thaliana protein match is: proline-rich family protein (TAIR:AT3G09000.1); Ha. [Source:TAIR;Acc:AT5G01280] | |
| AT5G01740.1 | AT5G01740.1 | AT5g01740/T20L15_10 [Source:UniProtKB/TrEMBL;Acc:Q9LZX2] | |
| AT5G03330.1 | AT5G03330.1 | At5g03330 [Source:UniProtKB/TrEMBL;Acc:Q9LZF7] | |
| AT5G03995.1 | AT5G03995.1 | Putative uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:Q0WRE7] | |
| AT5G04190.1 | AT5G04190.1 | Protein PHYTOCHROME KINASE SUBSTRATE 4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FYE2] | PKS4 |
| AT5G04390.1 | AT5G04390.1 | C2H2-type zinc finger family protein [Source:UniProtKB/TrEMBL;Acc:Q84K31] | |
| AT5G04840.1 | AT5G04840.1 | At5g04840 [Source:UniProtKB/TrEMBL;Acc:Q8L5X9] | |
| AT5G05250.1 | AT5G05250.1 | AT5g05250/K18I23_5 [Source:UniProtKB/TrEMBL;Acc:Q9FLC9] | |
| AT5G08010.1 | AT5G08010.1 | Uncharacterized protein F13G24.210 [Source:UniProtKB/TrEMBL;Acc:Q9SD83] | |
| AT5G08250.1 | AT5G08250.1 | Cytochrome P450 superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q9LEY2] | |
| AT5G08360.1 | AT5G08360.1 | At5g08360 [Source:UniProtKB/TrEMBL;Acc:Q84MC6] | |
| AT5G09800.1 | AT5G09800.1 | U-box domain-containing protein 28 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXE3] | PUB28 |
| AT5G10030.1 | AT5G10030.1 | At5g10030 [Source:UniProtKB/TrEMBL;Acc:Q24JJ3] | TGA4 |
| AT5G10210.1 | AT5G10210.1 | At5g10210 [Source:UniProtKB/TrEMBL;Acc:Q9LX09] | |
| AT5G10570.1 | AT5G10570.1 | Transcription factor bHLH61 [Source:UniProtKB/Swiss-Prot;Acc:Q9LXA9] | BHLH61 |
| AT5G10820.1 | AT5G10820.1 | Probable folate-biopterin transporter 6 [Source:UniProtKB/Swiss-Prot;Acc:Q9LEV7] | |
| AT5G12030.1 | AT5G12030.1 | 17.7 kDa class II heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:O81822] | HSP17.7 |
| AT5G13110.1 | AT5G13110.1 | Glucose-6-phosphate 1-dehydrogenase 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FY99] | G6PD2 |
| AT5G13180.1 | AT5G13180.1 | NAC domain-containing protein 83 [Source:UniProtKB/Swiss-Prot;Acc:Q9FY93] | NAC083 |
| AT5G13420.1 | AT5G13420.1 | Aldolase-type TIM barrel family protein [Source:UniProtKB/TrEMBL;Acc:Q9LYR4] | |
| AT5G13900.1 | AT5G13900.1 | Lipid transfer-like protein VAS [Source:UniProtKB/Swiss-Prot;Acc:Q9FFY3] | VAS |
| AT5G14760.1 | AT5G14760.1 | L-aspartate oxidase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94AY1] | AO |
| AT5G15060.1 | AT5G15060.1 | LOB domain-containing protein 34 [Source:UniProtKB/Swiss-Prot;Acc:P59469] | LBD34 |
| AT5G15330.1 | AT5G15330.1 | SPX domain gene 4 [Source:TAIR;Acc:AT5G15330] | ATSPX4 |
| AT5G15830.1 | AT5G15830.1 | At5g15830 [Source:UniProtKB/TrEMBL;Acc:Q9LFU3] | AtbZIP3 |
| AT5G17860.1 | AT5G17860.1 | Cation/calcium exchanger 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP1] | CCX1 |
| AT5G17880.1 | AT5G17880.1 | Disease resistance-like protein CSA1 [Source:UniProtKB/Swiss-Prot;Acc:F4KIF3] | CSA1 |
| AT5G18840.1 | AT5G18840.1 | Sugar transporter ERD6-like 16 [Source:UniProtKB/Swiss-Prot;Acc:Q8LBI9] | |
| AT5G19190.1 | AT5G19190.1 | Uncharacterized protein At5g19190/T24G5_90 [Source:UniProtKB/TrEMBL;Acc:Q8GYS0] | |
| AT5G19260.1 | AT5G19260.1 | Protein FANTASTIC FOUR 3 [Source:UniProtKB/Swiss-Prot;Acc:Q6NMR8] | FAF3 |
| AT5G19970.1 | AT5G19970.1 | unknown protein; Ha. [Source:TAIR;Acc:AT5G19970] | |
| AT5G20540.1 | AT5G20540.1 | Protein Brevis radix-like 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8GZ92] | BRXL4 |
| NA.3 | NA | NA | NA |
| AT5G20885.1 | AT5G20885.1 | AT5g20880/F22D1_50 [Source:UniProtKB/TrEMBL;Acc:Q93ZD8] | |
| AT5G22520.1 | AT5G22520.1 | At5g22520 [Source:UniProtKB/TrEMBL;Acc:Q9FK87] | |
| AT5G22610.1 | AT5G22610.1 | Putative F-box/FBD/LRR-repeat protein At5g22610 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNK0] | |
| AT5G23190.1 | AT5G23190.1 | Cytochrome P450 86B1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMY1] | CYP86B1 |
| AT5G24660.1 | AT5G24660.1 | Protein RESPONSE TO LOW SULFUR 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIR9] | LSU2 |
| AT5G26010.1 | AT5G26010.1 | Probable protein phosphatase 2C 72 [Source:UniProtKB/Swiss-Prot;Acc:Q9XGZ9] | |
| AT5G26200.1 | AT5G26200.1 | AT5g26200/T19G15_50 [Source:UniProtKB/TrEMBL;Acc:Q93YZ9] | |
| NA.4 | NA | NA | NA |
| AT5G28510.1 | AT5G28510.1 | Beta-glucosidase 24 [Source:UniProtKB/Swiss-Prot;Acc:Q9LKR7] | BGLU24 |
| NA.5 | NA | NA | NA |
| AT5G35190.1 | AT5G35190.1 | Proline-rich extensin-like family protein [Source:UniProtKB/TrEMBL;Acc:Q9LHS1] | |
| AT5G35870.1 | AT5G35870.1 | Gb [Source:UniProtKB/TrEMBL;Acc:Q9FFL6] | |
| AT5G37260.1 | AT5G37260.1 | Protein REVEILLE 2 [Source:UniProtKB/Swiss-Prot;Acc:F4K5X6] | RVE2 |
| AT5G38450.1 | AT5G38450.1 | Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9FF18] | CYP735A1 |
| AT5G39080.1 | AT5G39080.1 | Acyltransferase-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FID2] | |
| AT5G39610.1 | AT5G39610.1 | NAC domain-containing protein 92 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKA0] | NAC92 |
| AT5G40470.1 | AT5G40470.1 | AT5g40470/K21I16_20 [Source:UniProtKB/TrEMBL;Acc:Q9FI63] | |
| AT5G40850.1 | AT5G40850.1 | AT5g40850/MHK7_8 [Source:UniProtKB/TrEMBL;Acc:Q42606] | UPM1 |
| AT5G40850.2 | AT5G40850.2 | AT5g40850/MHK7_8 [Source:UniProtKB/TrEMBL;Acc:Q42606] | UPM1 |
| AT5G40990.1 | AT5G40990.1 | GDSL esterase/lipase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLN0] | GLIP1 |
| AT5G41670.2 | AT5G41670.2 | 6-phosphogluconate dehydrogenase, decarboxylating [Source:UniProtKB/TrEMBL;Acc:A0A178UQL8] | PGD3 |
| AT5G42630.1 | AT5G42630.1 | Probable transcription factor KAN4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJV5] | KAN4 |
| AT5G42830.1 | AT5G42830.1 | HXXXD-type acyl-transferase family protein [Source:UniProtKB/TrEMBL;Acc:Q9FMN6] | |
| AT5G42930.1 | AT5G42930.1 | Alpha/beta-Hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4K4J2] | |
| AT5G42990.1 | AT5G42990.1 | Probable ubiquitin-conjugating enzyme E2 18 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMM0] | UBC18 |
| AT5G43180.1 | AT5G43180.1 | At5g43180 [Source:UniProtKB/TrEMBL;Acc:Q9LUH6] | |
| AT5G43390.1 | AT5G43390.1 | Emb [Source:UniProtKB/TrEMBL;Acc:Q9LSX2] | |
| AT5G43890.1 | AT5G43890.1 | Flavin-containing monooxygenase [Source:UniProtKB/TrEMBL;Acc:A0A178UK83] | YUC5 |
| AT5G44350.1 | AT5G44350.1 | Ethylene-regulated nuclear protein ERT2-like protein [Source:UniProtKB/TrEMBL;Acc:Q9FKV3] | |
| AT5G44910.1 | AT5G44910.1 | Similarity to disease resistance protein [Source:UniProtKB/TrEMBL;Acc:Q9FLA7] | |
| AT5G45820.1 | AT5G45820.1 | CBL-interacting serine/threonine-protein kinase 20 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJ54] | CIPK20 |
| AT5G46590.1 | AT5G46590.1 | NAC domain-containing protein 96 [Source:UniProtKB/Swiss-Prot;Acc:Q9LS24] | anac096 |
| AT5G49360.1 | AT5G49360.1 | Beta-D-xylosidase 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGY1] | BXL1 |
| AT5G50210.1 | AT5G50210.1 | SUFE3 [Source:UniProtKB/TrEMBL;Acc:A0A178UIT6] | QS |
| AT5G50800.1 | AT5G50800.1 | Bidirectional sugar transporter SWEET [Source:UniProtKB/TrEMBL;Acc:A0A178UJY5] | SWEET13 |
| AT5G51050.1 | AT5G51050.1 | Mitochondrial substrate carrier family protein [Source:TAIR;Acc:AT5G51050] | |
| AT5G51830.1 | AT5G51830.1 | Probable fructokinase-7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLH8] | |
| AT5G51990.1 | AT5G51990.1 | C-repeat binding factor 4 [Source:UniProtKB/TrEMBL;Acc:B2BJ26] | DREB1D |
| AT5G52670.1 | AT5G52670.1 | Copper transport protein family [Source:UniProtKB/TrEMBL;Acc:Q9LTF0] | |
| AT5G52760.1 | AT5G52760.1 | Heavy metal-associated isoprenylated plant protein 14 [Source:UniProtKB/Swiss-Prot;Acc:Q9LTE1] | HIPP14 |
| AT5G53290.1 | AT5G53290.1 | Ethylene-responsive transcription factor CRF3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FK12] | CRF3 |
| AT5G54020.1 | AT5G54020.1 | Cysteine/Histidine-rich C1 domain family protein [Source:TAIR;Acc:AT5G54020] | |
| AT5G54030.1 | AT5G54030.1 | Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FN24] | |
| AT5G54170.1 | AT5G54170.1 | Polyketide cyclase/dehydrase and lipid transport superfamily protein [Source:UniProtKB/TrEMBL;Acc:F4JYV3] | |
| AT5G54660.1 | AT5G54660.1 | 21.7 kDa class VI heat shock protein [Source:UniProtKB/Swiss-Prot;Acc:Q9FIT9] | HSP21.7 |
| AT5G55110.1 | AT5G55110.1 | Stigma-specific STIG1-like protein 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FLQ0] | |
| AT5G57685.1 | AT5G57685.1 | Protein GLUTAMINE DUMPER 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9FHH5] | GDU3 |
| AT5G58320.2 | AT5G58320.2 | Protein NETWORKED 4A [Source:UniProtKB/Swiss-Prot;Acc:F4KEW8] | NET4A |
| AT5G58360.1 | AT5G58360.1 | Transcription repressor OFP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9LVL4] | OFP3 |
| AT5G58900.1 | AT5G58900.1 | Homeodomain-like transcriptional regulator [Source:UniProtKB/TrEMBL;Acc:Q9FIL9] | |
| AT5G59080.1 | AT5G59080.1 | Emb [Source:UniProtKB/TrEMBL;Acc:Q9FGU5] | |
| AT5G59220.1 | AT5G59220.1 | Probable protein phosphatase 2C 78 [Source:UniProtKB/Swiss-Prot;Acc:Q9FIF5] | SAG113 |
| AT5G59340.1 | AT5G59340.1 | WUSCHEL-related homeobox 2 [Source:UniProtKB/Swiss-Prot;Acc:Q6X7K1] | WOX2 |
| AT5G59930.1 | AT5G59930.1 | Cysteine/Histidine-rich C1 domain family protein [Source:UniProtKB/TrEMBL;Acc:Q9FJE3] | |
| AT5G60770.1 | AT5G60770.1 | High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8] | NRT2.4 |
| AT5G61010.1 | AT5G61010.1 | Exocyst complex component EXO70E2 [Source:UniProtKB/Swiss-Prot;Acc:Q9FNR3] | ATEXO70E2 |
| AT5G62160.1 | AT5G62160.1 | ZIP12 [Source:UniProtKB/TrEMBL;Acc:A0A178UGP0] | ZIP12 |
| AT5G62430.1 | AT5G62430.1 | Cyclic dof factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8W1E3] | CDF1 |
| AT5G62900.1 | AT5G62900.1 | Basic-leucine zipper transcription factor K [Source:UniProtKB/TrEMBL;Acc:Q9FM06] | |
| AT5G63160.1 | AT5G63160.1 | BTB/POZ and TAZ domain-containing protein 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FMK7] | BT1 |
| AT5G64750.1 | AT5G64750.1 | Ethylene-responsive transcription factor ABR1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FGF8] | ABR1 |
| AT5G64810.1 | AT5G64810.1 | Probable WRKY transcription factor 51 [Source:UniProtKB/Swiss-Prot;Acc:Q93WU9] | WRKY51 |
| AT5G64890.1 | AT5G64890.1 | Elicitor peptide 2 [Source:UniProtKB/Swiss-Prot;Acc:Q9LV88] | PEP2 |
| AT5G65030.1 | AT5G65030.1 | At5g65030 [Source:UniProtKB/TrEMBL;Acc:Q9LV76] | |
| AT5G65140.1 | AT5G65140.1 | Probable trehalose-phosphate phosphatase J [Source:UniProtKB/Swiss-Prot;Acc:Q5HZ05] | TPPJ |
| AT5G65790.1 | AT5G65790.1 | At5g65790 [Source:UniProtKB/TrEMBL;Acc:O49538] | ATMYB68 |
| AT5G65980.1 | AT5G65980.1 | Protein PIN-LIKES 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKY4] | PILS7 |
| AT5G66580.1 | AT5G66580.1 | Uncharacterized protein At5g66580 [Source:UniProtKB/TrEMBL;Acc:Q9FJY2] | |
| AT5G67080.1 | AT5G67080.1 | Mitogen-activated protein kinase kinase kinase 19 [Source:UniProtKB/TrEMBL;Acc:Q9FHA5] | MAPKKK19 |
| AT5G67190.1 | AT5G67190.1 | Ethylene-responsive transcription factor ERF010 [Source:UniProtKB/Swiss-Prot;Acc:Q9FH94] | ERF010 |
| AT5G67420.1 | AT5G67420.1 | LOB domain-containing protein 37 [Source:UniProtKB/Swiss-Prot;Acc:Q9FN11] | LBD37 |
library(stringi)
DEGenesNames = stri_remove_empty(r$external_gene_name, na_empty = FALSE)
save(file = "DEGenesDESeqAll.RData", DEGenesNames)
library(data.table)
kable(r[r$description %like% "Calcium" | r$description %like% "calcium", ])| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT1G76040.2 | AT1G76040.2 | calcium-dependent protein kinase 29 [Source:TAIR;Acc:AT1G76040] | CPK29 |
| AT1G76640.1 | AT1G76640.1 | Calcium-binding protein CML39 [Source:UniProtKB/Swiss-Prot;Acc:Q9SRE7] | CML39 |
| AT3G47480.1 | AT3G47480.1 | Probable calcium-binding protein CML47 [Source:UniProtKB/Swiss-Prot;Acc:Q9SN89] | CML47 |
| AT4G15740.1 | AT4G15740.1 | Calcium-dependent lipid-binding (CaLB domain) family protein [Source:UniProtKB/TrEMBL;Acc:O23425] | |
| AT5G17860.1 | AT5G17860.1 | Cation/calcium exchanger 1 [Source:UniProtKB/Swiss-Prot;Acc:Q9FKP1] | CCX1 |
| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT1G08090.1 | AT1G08090.1 | High-affinity nitrate transporter 2.1 [Source:UniProtKB/Swiss-Prot;Acc:O82811] | NRT2.1 |
| AT1G08100.1 | AT1G08100.1 | NRT2 [Source:UniProtKB/TrEMBL;Acc:A0A178W7F7] | NRT2.2 |
| AT1G12940.1 | AT1G12940.1 | High affinity nitrate transporter 2.5 [Source:UniProtKB/Swiss-Prot;Acc:Q9LPV5] | NRT2.5 |
| AT5G60770.1 | AT5G60770.1 | High affinity nitrate transporter 2.4 [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH8] | NRT2.4 |
| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT4G38340.1 | AT4G38340.1 | Protein NLP3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SVF1] | NLP3 |
| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT1G37130.1 | AT1G37130.1 | Nitrate reductase [NADH] 2 [Source:UniProtKB/Swiss-Prot;Acc:P11035] | NIA2 |
| AT1G77760.1 | AT1G77760.1 | Nitrate reductase [Source:UniProtKB/TrEMBL;Acc:A0A178WBR8] | NIA1 |
| AT2G15620.1 | AT2G15620.1 | Ferredoxin–nitrite reductase, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q39161] | NIR1 |
| ensembl_transcript_id | description | external_gene_name | |
|---|---|---|---|
| AT1G67110.1 | AT1G67110.1 | Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9ZW95] | CYP735A2 |
| AT5G38450.1 | AT5G38450.1 | Cytokinin hydroxylase [Source:UniProtKB/Swiss-Prot;Acc:Q9FF18] | CYP735A1 |